Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20618
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 143 9e-35
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 143 9e-35
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 143 9e-35
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.76
At1g29760.1 68414.m03639 expressed protein 31 0.76
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.3
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.1
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.1
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.1
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 4.0
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ... 29 4.0
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 7.1
At5g63000.1 68418.m07904 expressed protein 27 9.3
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 27 9.3
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 27 9.3
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 27 9.3
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 143 bits (347), Expect = 9e-35
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 125 bits (301), Expect = 3e-29
Identities = 58/95 (61%), Positives = 69/95 (72%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSPGTCV 540
IRYPDPLIK ND+I+LD+ KI+ G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 107 bits (257), Expect = 7e-24
Identities = 46/68 (67%), Positives = 57/68 (83%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Query: 690 TKAYISLP 713
TK ++SLP
Sbjct: 232 TKPWVSLP 239
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 143 bits (347), Expect = 9e-35
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 124 bits (300), Expect = 4e-29
Identities = 58/95 (61%), Positives = 69/95 (72%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSPGTCV 540
IRYPDPLIK ND+I+LD+ KI+ G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 107 bits (257), Expect = 7e-24
Identities = 46/68 (67%), Positives = 57/68 (83%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Query: 690 TKAYISLP 713
TK ++SLP
Sbjct: 232 TKPWVSLP 239
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 143 bits (347), Expect = 9e-35
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 124 bits (300), Expect = 4e-29
Identities = 58/95 (61%), Positives = 69/95 (72%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSPGTCV 540
IRYPDPLIK ND+I+LD+ KI+ G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 107 bits (257), Expect = 7e-24
Identities = 46/68 (67%), Positives = 57/68 (83%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Query: 690 TKAYISLP 713
TK ++SLP
Sbjct: 232 TKPWVSLP 239
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 123 KHSRNLWGPVDGLGAYTPPSLSNIHAL 43
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 234 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 142
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 213 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 97
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 552 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 710
G NL + + + R P +V + HT A T NNVF G+GT + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
glutamine phosphoribosylpyrophosphate amidotransferase,
putative / phosphoribosyldiphosphate 5-amidotransferase,
putative similar to amidophosphoribosyltransferase
[Arabidopsis thaliana] GI:469195; contains Pfam profiles
PF00156: Phosphoribosyl transferase domain, PF00310:
Glutamine amidotransferases class-II
Length = 532
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/91 (30%), Positives = 39/91 (42%)
Frame = +3
Query: 399 ECSVLGNA*WPHHPLSRPTYQSQRFHPVRHCNYEDYGFIKFESGNLCMITGGRNLGRVGT 578
EC V+G P SR +Y + H ++H E G + L ITG + V T
Sbjct: 76 ECGVVGIHGDPE--ASRLSYLA--LHALQHRGQEGAGIVAANQNGLESITGVGLVSDVFT 131
Query: 579 IVSRERHPGSFDIVHIKDSTGHTFATRLNNV 671
PG I H++ ST + A+ L NV
Sbjct: 132 ESKLNNLPGDIAIGHVRYST--SGASMLKNV 160
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At5g63000.1 68418.m07904 expressed protein
Length = 201
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 641 SRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDEAIIF 498
+RGV DV NV GAG + A G P A R + G L + F
Sbjct: 110 TRGVHDVFNVVGAGSATAAVFGLIMPGSLAWRARNVLLGSVLGATVCF 157
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 146 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 244
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 146 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 244
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 146 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 244
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 736
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,362,374
Number of Sequences: 28952
Number of extensions: 392043
Number of successful extensions: 1192
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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