Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20617
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    28   1.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    28   1.5  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.0  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   4.6  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.1  

>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 537 SFSTSQQYGCNNNSPAL*FFISISNTSAQIPCVCACACVYINKWQ*SVKFQCK 379
           S   S +Y   +N+P L  FIS+     Q+ C CA     I  +  S +F CK
Sbjct: 125 SKEASDEYMIVDNNPLLNKFISVPKEMNQLNC-CAYLAGIIEGFLDSAQFPCK 176


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 542 HFRLVLHNNMDVITTHQLYN-FL*VSLTLVPKYPVCVRAHVCISISGNDL*SFSVKC 375
           HFR +    +       LY  F+ VS TLVP YP  V+     SI  + L S S+ C
Sbjct: 397 HFRYLFLKTVFWTVRKNLYQGFITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDC 453


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 602 PGSCHQCNSQSLEMAHKLSAP 664
           PG+C +CNS  +EM    +AP
Sbjct: 20  PGNCPRCNSDFVEMVEPNTAP 40


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 585 ISLHTQKKCRTHNAAFSFSTSQQYGC 508
           I L+T++K   H+A+FSFS  + Y C
Sbjct: 250 IPLNTREK--VHSASFSFSGLESYAC 273


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 180 AVHKKPKPTIISTKSQVHCPAPYPFSRAESQTALDANAPSA 302
           + H    PTI+S    V    P P   AE + A + + PS+
Sbjct: 271 SAHYTSSPTILSRTKSVE--TPVPMEAAEEEPATEYSIPSS 309


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 45   RKTTVWYKKFF-RRLLNVSVLNSYILLKDKSL 137
            RK   WYKKF+   L+N +   ++I  +DKSL
Sbjct: 928  RKKLRWYKKFYLGELINKTRHCTFIEPQDKSL 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,608
Number of Sequences: 5004
Number of extensions: 66169
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)