Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20617
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1286 + 32387687-32387908,32388046-32389494                       34   0.13 
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169...    31   0.90 
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244...    30   1.6  
04_01_0249 - 3284107-3286377                                           29   4.8  
07_03_1107 - 24024387-24024497,24025799-24026410                       28   8.4  

>04_04_1286 + 32387687-32387908,32388046-32389494
          Length = 556

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 335 NVAMCIYTCYETYHTLH*NFTDHCHLLIYTHAHAHTQGIWALVLEIL 475
           NV   + TC ET+H  H  + +H H LI  H      G WA  + +L
Sbjct: 403 NVMGAVETCMETFHRFH-KYLNHSHPLIRAHFDPDACG-WAFGMNVL 447


>03_04_0058 -
           16915281-16915313,16915424-16915535,16915585-16916990,
           16919112-16919282
          Length = 573

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 335 NVAMCIYTCYETYHTLH*NFTDHCHLLIYTHAHAHTQGIWALVLEI--LIKNYKAGELLL 508
           NV   + TC E++H  H  + +  H +I +    HT G WA  + I  LI   KA    L
Sbjct: 387 NVIGAVETCLESFHRYH-KYLNFSHPIISSKIDPHTCG-WAFGMNIFDLIAWRKANATAL 444

Query: 509 HPY 517
           + Y
Sbjct: 445 YHY 447


>10_08_0655 -
           19621717-19622594,19623186-19623227,19624323-19624479,
           19625333-19625405,19625483-19625595
          Length = 420

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 290 CAVCPKRSATY-CKACNVAMCIYTCYE 367
           C VC K+ A Y C  CN   C   CY+
Sbjct: 36  CRVCQKQFAQYTCPRCNARYCSLPCYK 62


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
 Frame = +3

Query: 48  KTTVWYKKFFRRLLNVS--VLNSYILLKDKSLAHRNFRKALITELLAVHKKPKP------ 203
           +T  W    F+RL      +   Y  ++   +  R+FR  L   +  V KKP P      
Sbjct: 407 RTKNWKSGMFKRLAPEENWMEYEYQRMRGNHIDSRDFRDELFNSIWQVLKKPFPQRRPPR 466

Query: 204 TIISTKSQVHCPAPYPFSRAESQTAL 281
            II T++    PA  PF+ A  +  L
Sbjct: 467 QIIVTEAWRPAPAAPPFTHAHQEADL 492


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 180 AVHKKPKPTIISTKSQVHCPAPYPFSRAES-QTALDANAPSA 302
           A  KKP P     K     PAP P + AES + +  A AP+A
Sbjct: 144 AKKKKPSPPSKKKKKSSKAPAPAPVAVAESPKHSKKAKAPAA 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,373,003
Number of Sequences: 37544
Number of extensions: 413873
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)