Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20617
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_1285| Best HMM Match : SET (HMM E-Value=0.011) 31 0.92
SB_42751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_17028| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07) 30 1.6
SB_56470| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_14230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30) 29 4.9
SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2) 29 4.9
SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9) 29 4.9
SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9) 29 4.9
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10) 29 4.9
SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5) 28 8.6
>SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 289 MRRLPETVCHVLQSLQC-GNVYLYLL*DIPHFTLKLYRSLPLIDIHTCART 438
M+++ E +V++SL+C ++ YLL + T KLYR + D +C+RT
Sbjct: 44 MKKIFEEKAYVIKSLECVKGLWYYLLSLLLQSTTKLYRRCVINDSVSCSRT 94
>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 3 DRKDQLLAMYPIERRKTTVWYKKFFRRLLNVSVLNSYILLK 125
DR DQL+ K W+K F +++++V+NSYIL +
Sbjct: 499 DRSDQLMTKNKA-LSKCRRWWKVLFFHMIDIAVVNSYILFQ 538
>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
Length = 829
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 3 DRKDQLLAMYPIERRKTTVWYKKFFRRLLNVSVLNSYILLK 125
DR DQL+ K W+K F +++++V+NSYIL +
Sbjct: 499 DRSDQLMTKNNA-LSKCRRWWKVLFFHMIDIAVVNSYILFQ 538
>SB_42751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 3 DRKDQLLAMYPIERRKTTVWYKKFFRRLLNVSVLNSYIL-LKDKSLAHRNFRKAL 164
D+ DQ+L Y R KT WY++ + V++ N+++L +D+ R R +L
Sbjct: 37 DQSDQMLRYYTCIR-KTVKWYRRVLFHEVEVAIHNAFVLECEDREGTPRPIRTSL 90
>SB_17028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 232 IAQHRTLFQERKVRPP*TQMRRLPETVCHVLQSLQC 339
+A H + FQE + +L E++CH L SL+C
Sbjct: 124 LAAHSSEFQEDSITRKAVSWAQLEESICHDLSSLKC 159
>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
Length = 228
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 172 SCWQYTKNLSLRSSQQNLKYIAQHRTLFQERKVRPP 279
S W Y +LS S++ N++Y QH+ L + + P
Sbjct: 176 SFWNYNSDLSADSAEFNMRYQGQHKRLIERGIISCP 211
>SB_56470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Frame = +3
Query: 48 KTTVWYKKFFRRLLNVSVLNSYILL----KDKSLAHRNFRKALITELLAVHKKPKPTIIS 215
K+ WY+ F L +V+NS+IL K + ++R L L+ + K S
Sbjct: 91 KSLRWYRYLFIFLFETAVVNSHILRNLSPNHKKITQLDYRLELTEGLIGGNSSRKRKRAS 150
Query: 216 TKSQV-----HCPAPYPFSR 260
TK +V H P P +R
Sbjct: 151 TKIEVVDGKSHFPVKVPINR 170
>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 333 QALQYVADRFGQTAHLRLRRSDFP 262
+ ++Y FGQ HLRLR SD P
Sbjct: 30 RTIEYTIPAFGQILHLRLRPSDRP 53
>SB_14230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +2
Query: 239 STVPFFKSGKSDRLRRKCAVCPKRSATYCKACNVAMCIYTCYETYHTLH*NFTDHCHLLI 418
+T P F+S + + R VCP R+ C +A C + E+ H NFT L
Sbjct: 19 ATKPLFRSSERIDVSRHIKVCPLRAT----ECLIAGCRFIGNESEMAEH-NFTAADSHLK 73
Query: 419 YTHAHAHTQGIWALV-LEILIKNYKAGE 499
T ALV E L KNYK E
Sbjct: 74 LLQKECRTLRKAALVKFEELDKNYKKVE 101
>SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30)
Length = 343
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +2
Query: 305 KRSATYC-KACNVAMCIYTCYETYHTLH*NFTDHCHLLIYTHAHAHTQGIWALVLEILIK 481
KR+ C A + + + C+ YH L T + + H ++ +I +
Sbjct: 233 KRNKKVCIMAAVIVLGFFICWVPYHAL----TLYISYVWKNKPPRHVLSYLPVMYDIFV- 287
Query: 482 NYKAGELLLHPYCCEVLNENAALCVLHFFCVCRL 583
+++PY C + +EN C+ FC R+
Sbjct: 288 TMSFMSFVINPYICFMFSENFRKCLRQIFCRNRI 321
>SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2)
Length = 164
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 266 KSDRLR--RKCAVCPKRSATYCKACNVAMCIYTCYETYH 376
K+ RL+ K K++ C+ C+V +C+ C+ +H
Sbjct: 118 KNKRLKAGNKAVKRAKKTQNRCRKCDVQLCVGDCFREWH 156
>SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9)
Length = 302
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 3 DRKDQLLAMYPIERRKTTVWYKKFFRRLLNVSVLNSYIL 119
D+ DQ+L Y R KT WY++ + V + N+++L
Sbjct: 196 DQSDQMLRYYTCIR-KTVKWYRRVLFHEVEVVIHNAFVL 233
>SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9)
Length = 127
Score = 28.7 bits (61), Expect = 4.9
Identities = 28/109 (25%), Positives = 47/109 (43%)
Frame = -2
Query: 504 NNSPAL*FFISISNTSAQIPCVCACACVYINKWQ*SVKFQCKVWYVS*QV*IHIATLQAL 325
NN + F ++N S I + +C C + KW S C VW + V + + L L
Sbjct: 8 NNIFKILLFDLLNNVSPLIAVLLSCNCSWRRKWTHS-HHLCNVWTTAYLVTVPTSILHLL 66
Query: 324 QYVADRFGQTAHLRLRRSDFPLLKKGTVLGNVLEILLR*S*A*VFCVLP 178
+R+ R + P L TV +L I++ + + VF ++P
Sbjct: 67 TLSIERYKTLNDPLDRYKESPFL---TVKRAMLVIVVIWAYSFVFALIP 112
>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
Length = 567
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 290 CAVCPKRSATY-CKACNVAMCIYTCY 364
C C K+ + Y C CNV C +CY
Sbjct: 25 CFFCKKQFSKYTCPRCNVRYCSISCY 50
>SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5)
Length = 106
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 266 KSDRLR--RKCAVCPKRSATYCKACNVAMCIYTCYETYH 376
K+ RL+ K K + C+ C+V +C+ C+ +H
Sbjct: 65 KNKRLKAGNKAVKRAKETCNACRKCDVHLCVGDCFPEFH 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,328,178
Number of Sequences: 59808
Number of extensions: 517080
Number of successful extensions: 1320
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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