Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20617
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical...    30   1.4  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical p...    29   4.3  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family ...    28   7.6  
U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family ...    28   7.6  
U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family ...    28   7.6  

>AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical
           protein Y116A8C.40 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 407 HLLIYTHAHAHTQGIWALVLEILIKNYKAGELLLHPYCCEVLNENAALCVLHFFC 571
           +L+ Y         IW ++ E ++ +YKA  ++L  Y   + N + +  ++  +C
Sbjct: 36  YLMCYISLFEVYYSIWDMMTEPIVHSYKAAFVVLRDYNGSIFNRDVSFVLVCIYC 90


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
           protein C14C10.5 protein.
          Length = 1908

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 327 LQYVADRFGQTAHLRLRRSDFPLLKKGTVLGNV 229
           + Y   RF +  H++L +   PL+KKG +  NV
Sbjct: 128 IDYYGRRFSKEEHIQLIKIFLPLVKKGAIFRNV 160


>Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical
           protein F35C11.4 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 73  NFLYHTVVFLLSMGYIASNWSL 8
           NFLY TV+FLL   Y   N+SL
Sbjct: 92  NFLYQTVIFLLEQQYGTFNYSL 113


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 183 VHKKPKPTIISTKSQVHCPAPYPFSRAES 269
           + KK K T+I  K QV  PAP PF   E+
Sbjct: 814 IQKKLKFTVIPLKLQVFIPAPEPFLNQET 842


>Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical
           protein C50B6.8 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 377 CGMSHSKYKYTLPHCKLCSTW---QTVSGRRRICV*GGLTFRS*KR 249
           CG + + Y Y +P C  C T+     VS +  IC  GG  F   KR
Sbjct: 53  CGKTANGYHYDVPSCNGCKTFFRRLCVSEKSFICKAGGDCFNLTKR 98


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 281 RRKCAVCPKRSATYCKACNVAMCIYTC 361
           R KC  C +R  T C+ C    C   C
Sbjct: 89  RPKCCCCCRRCCTCCRTCCCTRCCTCC 115


>U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform a protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 FKSGKSDRLRRKCAVCPKRSATYCKACN 337
           FK    ++L   C V P  +  YCK C+
Sbjct: 36  FKCNMCNKLLDSCTVAPHEAELYCKQCH 63


>U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform c protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 245 VPFFKSGKSDRLRRKCAVCPKRSATYCKACN 337
           V  FK+   ++L   C V P  +  YCK C+
Sbjct: 101 VSCFKTYMCNKLLDSCTVAPHEAELYCKQCH 131


>U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform b protein.
          Length = 113

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 FKSGKSDRLRRKCAVCPKRSATYCKACN 337
           FK    ++L   C V P  +  YCK C+
Sbjct: 36  FKCNMCNKLLDSCTVAPHEAELYCKQCH 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,276,932
Number of Sequences: 27780
Number of extensions: 391154
Number of successful extensions: 1119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)