Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20617
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.6  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 308 RSATYCKACNVAMCIYTCY 364
           +  T+ ++C VA  I TCY
Sbjct: 249 KKTTFFESCGVADLIATCY 267


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 316  HVLQSLQCGNVY-LYLL*DIPHFTLKLYRSLPLIDIHT 426
            H L+ L CGN Y LYL     H  +    S P++ + T
Sbjct: 1460 HELKGLLCGNTYQLYL---TSHNKIGSSPSSPVLSVRT 1494


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 316  HVLQSLQCGNVY-LYLL*DIPHFTLKLYRSLPLIDIHT 426
            H L+ L CGN Y LYL     H  +    S P++ + T
Sbjct: 1456 HELKGLLCGNTYQLYL---TSHNKIGSSPSSPVLSVRT 1490


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 495 VSCYYIHIVVKY*TKMLHYVFYTFFVYVGL*YGG 596
           V+ Y IH+     T+ +  + Y + +Y+GL  GG
Sbjct: 104 VTKYLIHLKEIEDTEPILLIAYIYHLYMGLLSGG 137


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 657 LNLCAISNDCELHW*HDPGNY 595
           LNLCAIS D  +H   DP  Y
Sbjct: 114 LNLCAISLDRYIHI-KDPLRY 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,644
Number of Sequences: 438
Number of extensions: 5152
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)