Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20617
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 33 0.14
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 33 0.14
At4g36840.1 68417.m05224 kelch repeat-containing protein contain... 33 0.25
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 30 1.7
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 29 2.3
At2g20810.1 68415.m02448 glycosyl transferase family 8 protein c... 29 2.3
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ... 28 5.3
At1g60500.1 68414.m06811 dynamin family protein similar to RBTMx... 28 5.3
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 28 7.0
At3g17140.1 68416.m02187 invertase inhibitor-related weak simila... 28 7.0
At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase fa... 28 7.0
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 9.3
At2g18550.1 68415.m02161 homeobox-leucine zipper family protein ... 27 9.3
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 27 9.3
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 168 TELLAVHKKPKPTIISTKSQVHCPAPYPFSRAESQTALDANAPSARNGLP 317
T+L +V PKP+II +S+ +P + A SQ + N +GLP
Sbjct: 557 TDLPSVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLP 606
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 168 TELLAVHKKPKPTIISTKSQVHCPAPYPFSRAESQTALDANAPSARNGLP 317
T+L +V PKP+II +S+ +P + A SQ + N +GLP
Sbjct: 592 TDLPSVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLP 641
>At4g36840.1 68417.m05224 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 238
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 131 VIGTPEFPEGVNN*VVGSTQKT*AYDHLNKISSTLPSTVPFFKSGKSD-RLRRKCAVCPK 307
+ TP+ +N VV +K A D ++ S LPS +KSGK D ++ + C
Sbjct: 45 IFNTPKMAHSINQSVVIEEKKVYAVDEEDQSFSFLPSEGRIWKSGKKDSKVGGRHDWCVI 104
Query: 308 RSATYCKA 331
YC+A
Sbjct: 105 GKLLYCRA 112
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Frame = +2
Query: 236 PSTV-PFFKSGKSDRLRRKCAV------CPKRSATYC-KACNVAMCIYTCYETYHTLH*N 391
PS + P + + K D +RKC+V CP + C + C+ A+C + C +
Sbjct: 587 PSHIHPLYLTSKPDEEQRKCSVCKKSGHCPTKETFNCIEECDFALC-FECATLAQKVRYK 645
Query: 392 FTDHCHLLIYTHAHAHTQGIWALVLEILIKNYKAGELLLHPYCCEVLN 535
H L Y T W + E + N K YCC ++
Sbjct: 646 HDKHVLTLSYGD-KTSTMTYWCEICEERL-NPKERFYSCDEYCCVTIH 691
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +3
Query: 123 KDKSLAHRNFRKALITELLAVH----KKPKPTIISTKSQVHCPAPYPFSRAESQTALDAN 290
+D + HR F AL E H KK P I++ K+ V P P P ++ +
Sbjct: 177 RDSFITHRAFCDALAEENARSHHSQSKKQNPEILTRKNPVPNPVPAPVDTESAKIKSSST 236
Query: 291 APSARNGLPRT 323
++ P+T
Sbjct: 237 LTIKQSESPKT 247
>At2g20810.1 68415.m02448 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 536
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 335 NVAMCIYTCYETYHTLH*NFTDHCHLLIYTHAHAHTQGIWALVLEI 472
NV + TC ET+H H + ++ H LI +H G WA + +
Sbjct: 383 NVNGAVETCMETFHRYH-KYLNYSHPLIRSHFDPDACG-WAFGMNV 426
>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 767
Score = 28.3 bits (60), Expect = 5.3
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Frame = +2
Query: 248 PFFKSGKSDRLRRKCAVCPKRSATYCKA-------CNVAMCIYTCYETYHTLH*NFTDHC 406
P F + K R RR+C VC K+ ++ + C A+C + C H + H
Sbjct: 581 PLFLTSKP-RERRRCGVCKKKPLSHTETFNCIEGECTFALC-FGCATLPHEVRYKHDKHM 638
Query: 407 HLLIYTHAHAHTQGIWALVLEILIKNYKAGELLLHPYCCEVLN 535
L Y T W E I N + YCC L+
Sbjct: 639 LTLSYGE-ETSTMMYWCEACEKEI-NSEERFYKCDEYCCVTLH 679
>At1g60500.1 68414.m06811 dynamin family protein similar to RBTMx2
[Oncorhynchus mykiss] GI:1399452; contains Pfam profiles
PF01031: Dynamin central region, PF00350: Dynamin
family, PF02212: Dynamin GTPase effector domain
Length = 669
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +3
Query: 18 LLAMYPIERRKTTVWYKKFFRRLLNVSVLNSYILLKDKSLAHRNFRKALITELL 179
L+ + ++ R T+ W K RR+++ L Y+ L KSL + F+K ++ E++
Sbjct: 572 LIPAFDMKMRITSYW-KIVLRRIVDNLAL--YLQLSVKSLVNTRFQKEIVAEMV 622
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Frame = +2
Query: 248 PFFKSGKSDRLRRKCAVC-----PKRSATY-CKACNVAMCIYTCYETYHTLH*NFTDHCH 409
P F + K + R+C+VC + + T+ C C+ A+C + C + H
Sbjct: 535 PLFLTSKPEEDPRRCSVCKESRYARTNETFNCIECDFALC-FVCATLPQKVRYKHDKHVL 593
Query: 410 LLIYTHAHAHTQGIWALVLEILIKNYKAGELLLHPYCCEVLN 535
L Y + T W + E I K + YCC L+
Sbjct: 594 TLFYGN-ETSTITYWCEICEGTIDPTKR-FYVCDEYCCLTLH 633
>At3g17140.1 68416.m02187 invertase inhibitor-related weak
similarity to tomato invertase inhibitor [Lycopersicon
esculentum] GI:3582002
Length = 112
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 355 INTHCHIASFAVRGRPFRADGAFASKAV*LSALEKGYGAGQ 233
++ H A +++G P A+GA V S E G+ GQ
Sbjct: 47 VDVDVHTAIISIKGNPKFAEGAVVDAGVEASICEGGFTKGQ 87
>At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 594
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = +3
Query: 27 MYPIERRKTTVWYKKFFRRLLNVSVLNSYILLKDKSLAHRNFRKALITELLAVHKKPKPT 206
++P E+R+T W + + L SY+ + + HR E+ + HK+ K T
Sbjct: 510 LHPKEKRRTPAWCDRILWHGEGLHQL-SYVRGESRFSDHRPVYGIFSAEVESNHKRSKRT 568
Query: 207 IISTKSQVHCPAPYPFSRAESQ 272
+ ++V P++R ++
Sbjct: 569 NSHSTARVEAEELLPYARGYTE 590
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 560 HFFCVCRLIIWR*LPGSCHQCNSQSL--EMAHKLSAPL 667
H+F +C L W L GSC C + L + LS PL
Sbjct: 159 HYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPL 196
>At2g18550.1 68415.m02161 homeobox-leucine zipper family protein
similar to CRHB6 (GI:3868839) [Ceratopteris richardii];
contains Pfam PF00046: Homeobox domain
Length = 220
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 3 DRKDQLLAMYPIERRKTTVWYKKFFRRLLNVSVLNSYILLKD 128
+RKD+L + ++ R+ VW++ R N V + Y LK+
Sbjct: 86 ERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKN 127
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +2
Query: 302 PKRSATYCKACNVAMCIYTCYETYHTLH*NFTDHCHLLIYTHAHAHTQGIWAL-VLEILI 478
PK + C V C Y C E H + + Y H+ ++ + E I
Sbjct: 126 PKNDCSICNTRKVGTCYYFCVECDQRYHKECVESPLEINYPSHVKHSLQLYNVKTFEHCI 185
Query: 479 KNYKAGELLLHPYC--CEV 529
+ K E+LL+ YC C++
Sbjct: 186 LSTKKAEVLLY-YCALCDI 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,052
Number of Sequences: 28952
Number of extensions: 340774
Number of successful extensions: 864
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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