Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20616
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.30 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   1.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.9  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   8.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 306 KRSATYCKACNVAM---CIYTCYETYHTLH*NFT 398
           K     C+ CN+A     +YT +  YH  H  FT
Sbjct: 467 KEEGNSCQYCNIAFGDAVLYTIHMGYHGFHNPFT 500


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 297 VCPKRSATYCKACNVAMCI 353
           V  K++ T CKAC +  C+
Sbjct: 49  VINKKNRTACKACRLRKCL 67


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 549 LCVLHFFC 572
           LC+ HFFC
Sbjct: 164 LCIYHFFC 171


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 64  YHTVVFLLSMGYI 26
           Y  VVF++ MGYI
Sbjct: 96  YSVVVFVVVMGYI 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,178
Number of Sequences: 336
Number of extensions: 3918
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)