Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20616
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    28   0.98 
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    27   1.7  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.0  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   6.9  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   9.1  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.1  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   9.1  

>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 543 HFRLVLHNNMDGITTHQLYN-FL*VSLTLVPKYPVCVRAHVCISISGNDL*SFSVKC 376
           HFR +    +       LY  F+ VS TLVP YP  V+     SI  + L S S+ C
Sbjct: 397 HFRYLFLKTVFWTVRKNLYQGFITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDC 453


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 538 SFSTSQQYGWNNNSPAL*FFISISNTSAQIPCVCACACVYINKWQ*SVKFQCK 380
           S   S +Y   +N+P L  FIS+     Q+ C CA     I  +  S +F CK
Sbjct: 125 SKEASDEYMIVDNNPLLNKFISVPKEMNQLNC-CAYLAGIIEGFLDSAQFPCK 176


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 181 AVHKKPKPTIISTKSQVHCPAPYPLSRAESQTALDANAPSA 303
           + H    PTI+S    V    P P+  AE + A + + PS+
Sbjct: 271 SAHYTSSPTILSRTKSVE--TPVPMEAAEEEPATEYSIPSS 309


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +2

Query: 203 LRSSQQNLKYIAQHRTLCQERKVRPP*TQMRRLPETVCHVLQSLQCGNVYL 355
           L S+ + L+  +++ T+ Q +++RP    +     ++CH +     G+ Y+
Sbjct: 52  LNSNSEFLEECSKYYTIAQGKQMRPSLVLLMSKATSLCHGIDRSVVGDKYI 102


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +1

Query: 202 PTIISTKSQVHCPAPYPLSRAESQTALDANAPSARNGLPRTAKLAMWQ 345
           P  + T  ++H P P P+ + E   + +  +  A   +P   + A  Q
Sbjct: 289 PQYLQTLERIHRPLPVPVGKYERGDSFEDTSKKAETCVPAKPQKATHQ 336


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 303 PKRSATYCKACNVAMCIYTCYETYHTLH*NFTDHCHL 413
           P +S T  K+  V++C+Y    T++ L     D C+L
Sbjct: 286 PWKSCTILKSKPVSLCVYPEKITFNWLTEGTVDSCNL 322


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = -1

Query: 151 NSGVPMTY--LSVKYRSLGTLTFKSL-LKNFLYHTVVFLL-SMGYIASNWSLRS 2
           NSG+   Y  LSV    +    ++ L L    Y+++++LL SM Y+ + +SLR+
Sbjct: 240 NSGIKGLYRGLSVSMLKVAPGRYECLWLSCHFYYSIIYLLNSMFYLLTFYSLRA 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,935
Number of Sequences: 5004
Number of extensions: 60401
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)