Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20616
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)                   30   1.4  
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)        30   1.8  
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9)                     29   3.2  
SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2)                      29   4.2  
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)                29   4.2  
SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30)                 28   7.3  
SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)               28   7.3  
SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5)                      28   7.3  
SB_13811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_5710| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_43685| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_17028| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_14847| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_13118| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_8249| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_3620| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 290 MRRLPETVCHVLQSLQC-GNVYLYLL*DIPHFTLKLYRSLPLIDIHTCART 439
           M+++ E   +V++SL+C   ++ YLL  +   T KLYR   + D  +C+RT
Sbjct: 44  MKKIFEEKAYVIKSLECVKGLWYYLLSLLLQSTTKLYRRCVINDSVSCSRT 94


>SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)
          Length = 276

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 178 TTQLLTPSGNSGVPMTYLSVKYRSLGTLTFKSLLKNFLY 62
           T QL + + +S  P+T  +VKYR+ GT T + +L +  Y
Sbjct: 179 TMQLTSLADDSTGPLTGYTVKYRTSGTWTTREILSSSQY 217


>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
          Length = 228

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 173 SCWQYTKNLSLRSSQQNLKYIAQHRTLCQERKVRPP 280
           S W Y  +LS  S++ N++Y  QH+ L +   +  P
Sbjct: 176 SFWNYNSDLSADSAEFNMRYQGQHKRLIERGIISCP 211


>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 334 QALQYVADRFGQTAHLRLRRSDFP 263
           + ++Y    FGQ  HLRLR SD P
Sbjct: 30  RTIEYTIPAFGQILHLRLRPSDRP 53


>SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9)
          Length = 127

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/84 (26%), Positives = 34/84 (40%)
 Frame = -1

Query: 505 NNSPAL*FFISISNTSAQIPCVCACACVYINKWQ*SVKFQCKVWYVS*QV*IHIATLQAL 326
           NN   +  F  ++N S  I  + +C C +  KW  S    C VW  +  V +  + L  L
Sbjct: 8   NNIFKILLFDLLNNVSPLIAVLLSCNCSWRRKWTHS-HHLCNVWTTAYLVTVPTSILHLL 66

Query: 325 QYVADRFGQTAHLRLRRSDFPLLT 254
               +R+        R  + P LT
Sbjct: 67  TLSIERYKTLNDPLDRYKESPFLT 90


>SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2)
          Length = 164

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 267 KSDRLR--RKCAVCPKRSATYCKACNVAMCIYTCYETYH 377
           K+ RL+   K     K++   C+ C+V +C+  C+  +H
Sbjct: 118 KNKRLKAGNKAVKRAKKTQNRCRKCDVQLCVGDCFREWH 156


>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
          Length = 567

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 291 CAVCPKRSATY-CKACNVAMCIYTCY 365
           C  C K+ + Y C  CNV  C  +CY
Sbjct: 25  CFFCKKQFSKYTCPRCNVRYCSISCY 50


>SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30)
          Length = 343

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = +3

Query: 306 KRSATYC-KACNVAMCIYTCYETYHTLH*NFTDHCHLLIYTHAHAHTQGIWALVLEILIK 482
           KR+   C  A  + +  + C+  YH L    T +   +       H      ++ +I + 
Sbjct: 233 KRNKKVCIMAAVIVLGFFICWVPYHAL----TLYISYVWKNKPPRHVLSYLPVMYDIFV- 287

Query: 483 NYKAGELLFHPYCCEVLNENAALCVLHFFCVCRL 584
                  + +PY C + +EN   C+   FC  R+
Sbjct: 288 TMSFMSFVINPYICFMFSENFRKCLRQIFCRNRI 321


>SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)
          Length = 545

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 133 SLAHRNFRKALITELLAVHKKPKPTIISTKSQVHCPAPYPLSRAESQTALDANA 294
           +L H   R   I  ++  HK+P  T     S+V  PAP  LSR  +     A A
Sbjct: 397 TLNHYEERDKCIERIVQYHKQPS-TFEEFASRVFSPAPNTLSRPSTPLGTAAEA 449


>SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5)
          Length = 106

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 267 KSDRLR--RKCAVCPKRSATYCKACNVAMCIYTCYETYH 377
           K+ RL+   K     K +   C+ C+V +C+  C+  +H
Sbjct: 65  KNKRLKAGNKAVKRAKETCNACRKCDVHLCVGDCFPEFH 103


>SB_13811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 586 ISLHTQKKCRTHNAAFSFSTSQQYGWNNNSPAL*FFISISNTSAQIPCV 440
           +S++T++  R   A       +++ WN +SPA    I+I N +  +  +
Sbjct: 47  VSINTKRGARARGAPAGIKMLKKFHWNLHSPAKVTPITIENDNPNVTTI 95


>SB_5710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 586 ISLHTQKKCRTHNAAFSFSTSQQYGWNNNSPAL*FFISISNTSAQIPCV 440
           +S++T++  R   A       +++ WN +SPA    I+I N +  +  +
Sbjct: 47  VSINTKRGARARGAPAGIKMLKKFHWNLHSPAKVTPITIENDNPNVTTI 95


>SB_43685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 586 ISLHTQKKCRTHNAAFSFSTSQQYGWNNNSPAL*FFISISNTSAQIPCV 440
           +S++T++  R   A       +++ WN +SPA    I+I N +  +  +
Sbjct: 109 VSINTKRGARARGAPAGIKMLKKFHWNLHSPAKVTPITIENDNPNVTTI 157


>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1938

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 178 TTQLLTPSGNSGVPMTYLSVKYRSLGTLTFKSLLKNFLY 62
           T QL + + +S  P+T  +VKYR+ G  T + +L    Y
Sbjct: 662 TLQLTSSADDSTGPLTGYTVKYRTSGEWTTREILSPSQY 700


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 91  TLVSLNSYILLKDKSLAHRNFRKALITELLAVHKKPKPTIISTKSQ 228
           T   L+ YI +       ++F + L  E++ + +KPK  II TKS+
Sbjct: 182 TSAMLDGYIYINQAIEVSQDFERNL--EMMQLRRKPKCAIIRTKSR 225


>SB_17028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 233 IAQHRTLCQERKVRPP*TQMRRLPETVCHVLQSLQC 340
           +A H +  QE  +        +L E++CH L SL+C
Sbjct: 124 LAAHSSEFQEDSITRKAVSWAQLEESICHDLSSLKC 159


>SB_14847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 586 ISLHTQKKCRTHNAAFSFSTSQQYGWNNNSPAL*FFISISNTSAQIPCV 440
           +S++T++  R   A       +++ WN +SPA    I+I N +  +  +
Sbjct: 47  VSINTKRGARARGAPAGIKMLKKFHWNLHSPAKVTPITIENDNPNVTTI 95


>SB_13118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 586 ISLHTQKKCRTHNAAFSFSTSQQYGWNNNSPAL*FFISISNTSAQIPCV 440
           +S++T++  R   A       +++ WN +SPA    I+I N +  +  +
Sbjct: 47  VSINTKRGARARGAPAGIKMLKKFHWNLHSPAKVTPITIENDNPNVTTI 95


>SB_8249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 586 ISLHTQKKCRTHNAAFSFSTSQQYGWNNNSPAL*FFISISNTSAQIPCV 440
           +S++T++  R   A       +++ WN +SPA    I+I N +  +  +
Sbjct: 47  VSINTKRGARARGAPAGIKMLKKFHWNLHSPAKVTPITIENDNPNVTTI 95


>SB_3620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 586 ISLHTQKKCRTHNAAFSFSTSQQYGWNNNSPAL*FFISISNTSAQIPCV 440
           +S++T++  R   A       +++ WN +SPA    I+I N +  +  +
Sbjct: 47  VSINTKRGARARGAPAGIKMLKKFHWNLHSPAKVTPITIENDNPNVTTI 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,290,625
Number of Sequences: 59808
Number of extensions: 473409
Number of successful extensions: 1338
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)