Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20616
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13300.2 68416.m01675 transducin family protein / WD-40 repea...    33   0.12 
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea...    33   0.12 
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    32   0.28 
At4g36840.1 68417.m05224 kelch repeat-containing protein contain...    31   0.64 
At2g20810.1 68415.m02448 glycosyl transferase family 8 protein c...    29   2.0  
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ...    28   6.0  
At1g20150.1 68414.m02520 subtilase family protein similar to sub...    28   6.0  
At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains...    27   7.9  

>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1309

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 169 TELLAVHKKPKPTIISTKSQVHCPAPYPLSRAESQTALDANAPSARNGLP 318
           T+L +V   PKP+II  +S+      +P + A SQ  +  N     +GLP
Sbjct: 557 TDLPSVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLP 606


>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1344

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 169 TELLAVHKKPKPTIISTKSQVHCPAPYPLSRAESQTALDANAPSARNGLP 318
           T+L +V   PKP+II  +S+      +P + A SQ  +  N     +GLP
Sbjct: 592 TDLPSVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLP 641


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = +1

Query: 58  CGTKNFLEGS*TLVSLNSYILLKDKSLAHRNFRKALITELLAVH----KKPKPTIISTKS 225
           CGTK +     TL S       +D  + HR F  AL  E    H    KK  P I++ K+
Sbjct: 161 CGTKEYKCDCGTLFSR------RDSFITHRAFCDALAEENARSHHSQSKKQNPEILTRKN 214

Query: 226 QVHCPAPYPLSRAESQTALDANAPSARNGLPRT 324
            V  P P P+    ++    +     ++  P+T
Sbjct: 215 PVPNPVPAPVDTESAKIKSSSTLTIKQSESPKT 247


>At4g36840.1 68417.m05224 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 238

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 132 VIGTPEFPEGVNN*VVGSTQKT*AYDHLNKISSTLPSTVPFVKSGKSD-RLRRKCAVCPK 308
           +  TP+    +N  VV   +K  A D  ++  S LPS     KSGK D ++  +   C  
Sbjct: 45  IFNTPKMAHSINQSVVIEEKKVYAVDEEDQSFSFLPSEGRIWKSGKKDSKVGGRHDWCVI 104

Query: 309 RSATYCKA 332
               YC+A
Sbjct: 105 GKLLYCRA 112


>At2g20810.1 68415.m02448 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 536

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 336 NVAMCIYTCYETYHTLH*NFTDHCHLLIYTHAHAHTQGIWALVLEI 473
           NV   + TC ET+H  H  + ++ H LI +H      G WA  + +
Sbjct: 383 NVNGAVETCMETFHRYH-KYLNYSHPLIRSHFDPDACG-WAFGMNV 426


>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 769

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 237 PSTV-PFVKSGKSDRLRRKCAVCPKRSATYCKACNVAMCIYTC 362
           PS + P   + K D  +RKC+VC K  + +C       CI  C
Sbjct: 587 PSHIHPLYLTSKPDEEQRKCSVCKK--SGHCPTKETFNCIEEC 627


>At1g20150.1 68414.m02520 subtilase family protein similar to
           subtilisin-type protease precursor GI:14150446 from
           [Glycine max]
          Length = 780

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 247 YPLSRAESQTALDANAPSARNGLPRT 324
           YPL  A S   +DAN  +ARN  P T
Sbjct: 374 YPLIHARSAKKIDANEEAARNCAPDT 399


>At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains
           Pfam PF00684 : DnaJ central domain (4 repeats)
          Length = 132

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 255 VKSGKSDRLRRKCAVCPKRSATYCKACNVAMCI 353
           VKS +++R+ R+C  C       C+ C V  C+
Sbjct: 88  VKS-ENNRIYRRCPTCKAVGFVLCRKCKVFKCV 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,878
Number of Sequences: 28952
Number of extensions: 309490
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)