Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20615
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.31
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 0.53
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 2.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 3.8
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 5.0
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 5.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 5.0
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 5.0
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 6.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 6.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.6
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 25 6.6
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 6.6
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 24 8.7
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 24 8.7
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 29.1 bits (62), Expect = 0.31
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -2
Query: 351 LVLGDSPSIDTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDPVP 172
L + PS+D P S PP+ S S + S P+ + + AP P P
Sbjct: 45 LTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104
Query: 171 ERRG 160
+ G
Sbjct: 105 PQGG 108
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 0.53
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 105 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 251
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 325 RHRTARQQQAASNEYIEYDFA 263
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 3.8
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = -2
Query: 312 PDSSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDPVPERR-------GNR 154
P S P STS P SRV L ++ RP P P P RR GN
Sbjct: 277 PVSMNPAINSTSKPPLPPPSSRV------SAAALAANKKRPPPPPPPSRRNRGKPPIGNG 330
Query: 153 SGHTSL 136
S ++SL
Sbjct: 331 SSNSSL 336
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 72 SQKVEKPVLSGQRIKTRKRDE 134
+Q++++PV G IK K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 5.0
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = -2
Query: 420 SFTN--TCSKFRMVSISSLAEKMQVLVLGDSPSI-DTEPPDSSRPPAMSTSNMTSP*RRS 250
SFTN T S + ++ EK SI D++ ++ A + S ++P + S
Sbjct: 297 SFTNVPTSSPLHQSTTANHPEKTPSRAAASLLSILDSKEKNTPSITAKAGSPQSAPSKAS 356
Query: 249 RV--LIRPSLGTCRLRRDRHRPAPD-PVPERR 163
+ RP + T R R D+ RP+ + PE++
Sbjct: 357 YISPYARPGITTSRRRHDQIRPSSEKSEPEKK 388
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 5.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 127 EMRKRSMTRTVSATLWYRVWSGP-VAISTQPTST*TRPDQNSTTT 258
E+ RSM T+ T P V +T PT+ T P + +TTT
Sbjct: 235 EVVGRSMVSTIRTTTPMEAMITPTVETTTLPTAAMTTPVEETTTT 279
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 73 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSG 192
V+R K + +RPE EM + + LWY WSG
Sbjct: 43 VKRKKQPARKQIETRPEYEMEPEQPGQVYN--LWYNKWSG 80
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 258 RRSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNRS 151
RRSR RPS RRD + +P P +R NRS
Sbjct: 274 RRSRDDGRPSHDD-EYRRDAYSRSPSPRRDREENRS 308
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 103 VNGSRPEKEMRKRSMTRTVS 162
+N S+ EK++RKR+ R +S
Sbjct: 754 LNASKGEKDLRKRTQERLIS 773
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 430 PTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEYDFAI 260
PTH F +YL S LI + V + + H + + R + S +Y E+ I
Sbjct: 152 PTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEHGLFI 209
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 342 GDSPSIDTEPPDSSRP 295
GDS S T PD SRP
Sbjct: 484 GDSGSFQTSTPDDSRP 499
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 324 DTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPSL 226
DTE P+S STS + P SR+ +R ++
Sbjct: 16 DTERPNSKSSRLSSTSGSSHPSSSSRLTVRSAV 48
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 345 RPTPASSPPMRIWTPCEI 398
R PA +P + WT CEI
Sbjct: 715 RVKPAPNPHVHAWTHCEI 732
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 424 HQFHEYLFEISHGVHILI 371
H F E F++S G HI++
Sbjct: 363 HAFEEQSFQMSQGAHIVV 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,481
Number of Sequences: 5004
Number of extensions: 34779
Number of successful extensions: 115
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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