Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20615
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 51 3e-07
01_06_1226 - 35518981-35519295,35519876-35520745 30 0.92
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 2.1
12_02_0749 - 22758317-22760407 28 3.7
09_04_0350 + 16899076-16900164 28 3.7
09_02_0556 + 10637362-10637575,10637728-10637825 28 3.7
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347... 28 3.7
09_04_0258 - 16175258-16176069,16176111-16176414 27 4.9
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164... 27 4.9
04_03_0519 - 16745098-16745150,16745368-16745608,16745733-167458... 27 4.9
03_05_0600 + 26021863-26022469,26022562-26022992 27 4.9
12_02_1081 + 25914180-25914371,25918121-25919104 27 6.5
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 27 6.5
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 27 6.5
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 8.6
07_03_1399 - 26274064-26274303,26274395-26274652,26274791-262749... 27 8.6
05_03_0348 - 12792940-12793335 27 8.6
04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870... 27 8.6
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 27 8.6
01_03_0211 - 13830871-13831463,13831549-13831915 27 8.6
01_03_0210 + 13825272-13825707,13825794-13826386 27 8.6
01_01_0256 - 2083973-2084816,2084922-2086093 27 8.6
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 51.2 bits (117), Expect = 3e-07
Identities = 28/64 (43%), Positives = 37/64 (57%)
Frame = +3
Query: 45 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKY 224
+L +S+ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+ K
Sbjct: 59 DLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKS 115
Query: 225 LDSA 236
++S+
Sbjct: 116 IESS 119
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 0.92
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 425 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPTAAGR 294
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -2
Query: 330 SIDTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 154
S PP +++PP +S N+ + SR+ +P ++ P DP P ++ R
Sbjct: 110 SAKVSPPPAAKPPKLSPPNLAKATKPSRLAAKPP------KKAAPGPELDPKPRKKAQR 162
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -3
Query: 368 RRRCRCWSWAIRRPSTPNR 312
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 3.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 401 RNFAWCPYPHWRRRCRCWSW 342
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>09_02_0556 + 10637362-10637575,10637728-10637825
Length = 103
Score = 27.9 bits (59), Expect = 3.7
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = -2
Query: 360 MQVLVLGDSPSIDTEPPDSSRPPAMSTSNMTSP*R-RSRVLIRPSLGTCRLRRDRHRPAP 184
M L L SPS+ + P S P S+ S R R +L L R +
Sbjct: 1 MSSLSLSFSPSLQSSRPPSPLPSTADRSSTPSAVSGRHRRRAPATLAVPPLPRSPSLSSV 60
Query: 183 DPVPERRGNRSGHTSLSHLFFWS*SVDP 100
PV RRG R G + S + VDP
Sbjct: 61 -PVEARRGGRRGDCTASFISIHGADVDP 87
>07_01_0457 -
3468419-3468585,3469674-3469842,3470339-3470384,
3470671-3470753,3471395-3471474,3472320-3472428,
3472667-3472735,3472874-3472924,3473059-3473184,
3473312-3473435,3473617-3473672,3473790-3473854,
3474438-3474513,3475050-3475108,3475275-3475365,
3475490-3475990
Length = 623
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 396 FRMVSISSLAEKMQVLVLGDSPSIDTEPPDSS 301
+ + SISS A ++ ++LGDSP DT+ + S
Sbjct: 498 YNLRSISSSATEVVKVLLGDSPVYDTDATEPS 529
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 237 RPSLGTCRLRRDRHRPAPDPVPERRGNR 154
+P G RLRR RH A P +R G R
Sbjct: 146 QPRGGAVRLRRLRHAAAVPPARQRHGRR 173
>06_01_0218 +
1647624-1647757,1648044-1648112,1648493-1648549,
1648768-1648934,1649661-1649716,1650319-1650490,
1650747-1650810,1651037-1651119,1651243-1651334,
1652028-1652134,1652398-1652461,1652630-1652770
Length = 401
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 201 RHRPAPDPVPERRGNRS 151
R RPAPDPV RG+R+
Sbjct: 12 RRRPAPDPVAVLRGHRA 28
>04_03_0519 -
16745098-16745150,16745368-16745608,16745733-16745804,
16745982-16746050,16746883-16746948,16747143-16747313,
16747392-16747508
Length = 262
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -2
Query: 306 SSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDPVPE 169
SS P A +T+N SP +RS+V P T R RRD P+P +
Sbjct: 35 SSLPTATATTN-ASP-KRSKVAPAPE--TTRRRRDAAEEKPEPAKD 76
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 333 PSIDTEPPDSSRPPA 289
PS+D EPP S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -2
Query: 234 PSLGTCRLRR-DRHRP-APDPVP 172
P LG CRLRR + HRP P+ VP
Sbjct: 11 PPLGPCRLRRQELHRPRRPNHVP 33
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 27.1 bits (57), Expect = 6.5
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +3
Query: 42 HNLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYK 221
+N+LI +C S K+E+ ++ + E D F + L+ G R GDL+ AY
Sbjct: 503 YNILIENFCRSNKMEE----ASKVIVKMSQEGLHPDAVSF-NTLIYGFCR-NGDLEGAYL 556
Query: 222 YLDSAGSKLDYDAMAKSYS 278
K Y A A +++
Sbjct: 557 LFQKLEEK-GYSATADTFN 574
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 374 HWRRRCRCWSWAIRRPSTPNRPTAA 300
H R R W+WA+ P RPT++
Sbjct: 341 HGARSHRSWAWALASPMRALRPTSS 365
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 336 SPSIDTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPS 229
SPSI PP P A ++ P V IRPS
Sbjct: 44 SPSIPPPPPPQRPPAATVAPSVPDPSPSGHVTIRPS 79
>07_03_1399 -
26274064-26274303,26274395-26274652,26274791-26274916,
26275012-26275109,26275200-26275265,26275350-26275395
Length = 277
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 336 SPSIDTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPSL 226
+PS + E DS S+S+ ++ R+ ++L +PSL
Sbjct: 145 NPSTEPEEDDSDSTDGGSSSDSSASHRKRKILCKPSL 181
>05_03_0348 - 12792940-12793335
Length = 131
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 371 WRRRCRCWSWAIRRPSTPNR 312
WR+R RCW ++ ++P+R
Sbjct: 7 WRKRRRCWRGGGKKEASPSR 26
>04_03_0397 -
15362353-15363383,15385301-15385910,15386890-15387096,
15388287-15388313,15388397-15388471
Length = 649
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 216 RLRRDRHRPAPDPVPE 169
R R RH P PDPV E
Sbjct: 311 RTRHGRHEPTPDPVSE 326
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 147 DPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYDAMAKSYSMY 284
DP FRD L+ + L +Y DS+ DY A ++Y++Y
Sbjct: 94 DPT-FRDELISYGRSSTHMLHLSYFKDDSSAEAWDYSAWVRNYALY 138
>01_03_0211 - 13830871-13831463,13831549-13831915
Length = 319
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 333 ANRPRPTPASSPPMRIWTPCEISNRY 410
A P P A P IWTPC I R+
Sbjct: 84 AKPPHPKEAPRPVDPIWTPCCIDWRF 109
>01_03_0210 + 13825272-13825707,13825794-13826386
Length = 342
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 333 ANRPRPTPASSPPMRIWTPCEISNRY 410
A P P A P IWTPC I R+
Sbjct: 107 AKPPHPKEAPRPVDPIWTPCCIDWRF 132
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/59 (23%), Positives = 23/59 (38%)
Frame = -2
Query: 333 PSIDTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGN 157
P + + P+ +P T+ +P S +G + + H PAP P GN
Sbjct: 566 PQMAVKQPELQQPGLYRTTAAPTPVPASNAPAYAGMGYHHVIQTHHHPAPQPAATVAGN 624
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,930,825
Number of Sequences: 37544
Number of extensions: 264330
Number of successful extensions: 1219
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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