Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20615
(433 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 48 4e-06
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 1.2
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 1.2
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 2.2
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 28 3.8
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) 28 3.8
SB_9199| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56) 27 6.6
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_25756| Best HMM Match : Secretogranin_V (HMM E-Value=7.3) 27 6.6
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_51989| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 27 8.7
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5) 27 8.7
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 27 8.7
SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06) 27 8.7
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028) 27 8.7
>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
Length = 457
Score = 47.6 bits (108), Expect = 4e-06
Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 242 KTRLRRYGEVIFDVLIAXXXXXXXXXXXMDGESP---KTNTCIFSANEDMDTMRNFEQVF 412
K R YGE +FDVL A DG +P KTN CIF AN D +T+R Q+
Sbjct: 42 KLNYRLYGEFLFDVLFAAPGGSIVE----DGPNPSTYKTNICIFEANNDNETLRKHVQMH 97
Query: 413 VKLMRRY 433
KL+ RY
Sbjct: 98 NKLICRY 104
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +3
Query: 132 EKEKYDPNGFRDALVQG---LERAGGDLDAAYKYLDSAGSKLDY 254
EKEK+ P GFRDA++ G L G DL+ K+LD++G KL+Y
Sbjct: 2 EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNY 45
>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 609
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 109 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 255
G + KE +K TV T + P AIS+QPT +P D+N T
Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90
>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 366
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 109 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 255
G + KE +K TV T + P AIS+QPT +P D+N T
Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 417 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPDSSRPPA 289
+ + S+ R +++++ ++QV PSI ++PP PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +3
Query: 102 GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 191
G++ K RK DEK +K+DP+G LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 73 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 195
V R K + RV + + R+R + LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 333 PSIDTEPPDSSRPPAMSTSNMTSP*RRS 250
P D PP S PP +S S+ ++P R S
Sbjct: 733 PPPDESPPSSKHPPTVSPSSSSAPPRPS 760
>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = -2
Query: 417 FTNT-CSKFRMV--SISSLAEKMQVLVLGD---SPSIDTEPPDSSRPPAMSTS 277
F+NT CS F ++ SI++ K+ V +P + T PP +RPP STS
Sbjct: 377 FSNTNCSTFNILFSSITNPCAKVFVECCNGVTPAPPLGTLPPPGTRPPPPSTS 429
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -2
Query: 330 SIDTEPPDSSRPPAMSTSNMTSP*R--RSRVLIRPSLGTCRLRRDRHRPAPDPV 175
+ID P S P S+ +P R R RV RP RLR R A P+
Sbjct: 844 TIDLPPTSPSYTPGRVHSDPETPRRAGRGRVARRPGSAIARLRAPPQRAAASPL 897
>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
Length = 409
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 228 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 85
L C + RDR+ P+ R + HT++ +F W S V +I ++
Sbjct: 26 LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74
>SB_9199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 45 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNG 158
NL+ +IYC Q KPV R + RK+ E++ D +G
Sbjct: 18 NLMENIYCSVQNNGKPV--RDRPEQRKKKEEDNDDDSG 53
>SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 126 FFWS*SVDPIILVFLPSDSYNILILTGYVGAFYSFC 19
FFW + I+ +L SD Y ++ GY +SFC
Sbjct: 68 FFWGYTPAQIVGGYL-SDKYGGEVVLGYAAIIWSFC 102
>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
Length = 581
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 327 IDTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDPVPE 169
+D++P S P + N +P R+ RPS T R R P P P+
Sbjct: 119 VDSKPSQSFNPETPFSKNEMTPWRQGSSGFRPSSKTIRDRTLSRLPTLRPSPK 171
>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 306 SSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDP 178
S R A S + R S+ +P+ GT R DR RPAP P
Sbjct: 139 SHRLSASPNSRLPMIRRVSQPATKPTTGTSS-RTDRSRPAPSP 180
>SB_25756| Best HMM Match : Secretogranin_V (HMM E-Value=7.3)
Length = 216
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 375 SLAEKMQVLVLGDSPSIDTEPP-DSSRPPAMS 283
S E +Q +L +PSI EPP D SRP S
Sbjct: 41 SSEESLQNQLLHGTPSISIEPPSDGSRPSTSS 72
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 345 LGDSPSIDTEPPDSSRPPAMSTSNMTS 265
L D+P+ + PP S+ P A ST M+S
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSS 188
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/57 (38%), Positives = 25/57 (43%)
Frame = -2
Query: 333 PSIDTEPPDSSRPPAMSTSNMTSP*RRSRVLIRPSLGTCRLRRDRHRPAPDPVPERR 163
P D + DS PP + + P RR R R S R RRD P P P P RR
Sbjct: 873 PRRDRKRYDS--PPRRRRRSPSPPPRRRR---RDSYSPSRRRRDS--PTPSPPPRRR 922
>SB_51989| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 473
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 339 DSPSIDTEPPDSSRPPAMSTSNMTSP*RRSRVLIR-PSLGTCRLRRDRHRPAPDPVPERR 163
DSPS T D S PPA ++ V+ + P + +L + R +PA P P R
Sbjct: 68 DSPSGTTSTTDLSTPPANGCESLKYDQPYGNVVNKPPQVDVTKLIKPR-QPASKPAPPAR 126
>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
Length = 279
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 414 TNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPDSSRPPAMSTSNMTSP 262
T T FR + +S L PS+ ++ SS PP+ S+S P
Sbjct: 72 TMTKVVFRTMRVSQTRSSSSSQSLPPPPSLSSQTSSSSPPPSSSSSQSLPP 122
>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
Length = 114
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 367 GEDAGVGLGRFAVHRHRTARQQQAASNEYIE 275
G AG G G F H +R R+++ EYIE
Sbjct: 69 GSSAGAGSGEF--HVYRATRRREYNRQEYIE 97
>SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06)
Length = 192
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 48 LLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQ 179
LL Y +K E + + R K +K E EKY NG + A Q
Sbjct: 25 LLDYCYTSLEKFEDAIETRPRGKIKKDKETEKYKTNGIKFAYNQ 68
>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
Length = 1444
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 243 LIRPSLGTCRLRRDRHRPAPDPVPERRG 160
LI+P+L + +R HRPA P RRG
Sbjct: 1271 LIKPNLNSVLIRSTAHRPAMQP-RSRRG 1297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,553
Number of Sequences: 59808
Number of extensions: 283120
Number of successful extensions: 1029
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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