Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20612
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   3.2  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.2  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   5.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 200 FYYCICTRNPHVCK 241
           F+YC  T+NP+  K
Sbjct: 308 FFYCAATKNPNFDK 321


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 241 FAYVWITCTDTIVKSNITHTGNIII 167
           F Y+ +TC  T   S I HT + II
Sbjct: 140 FTYLSVTCYVTYAWSPIDHTESNII 164


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 2   YTETLELISQGGWR 43
           Y E +EL  +GGW+
Sbjct: 299 YNEIVELQKEGGWK 312


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 89  QVGCELVHPSKQ*KKHL-QVSARIRLLYN 172
           Q+GC+L  P+   +KHL  +   + L++N
Sbjct: 41  QMGCDLDIPNSVVQKHLILLMVLVNLIFN 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,757
Number of Sequences: 336
Number of extensions: 2774
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)