Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20612
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43375-10|AAA83627.1|  520|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z48009-3|CAA88078.1|  331|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U43375-10|AAA83627.1|  520|Caenorhabditis elegans Hypothetical
           protein K09C4.1a protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 558 LNMDVTTAISVVTTIFHLNTTYPIKYCVNVNLKL 457
           L  D TTA SV T  FH    + ++  +N+NL L
Sbjct: 278 LQFDTTTAQSVYTIDFHKTAGFTVQEALNINLIL 311


>Z48009-3|CAA88078.1|  331|Caenorhabditis elegans Hypothetical
           protein AH6.4 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -2

Query: 531 SVVTTIFHLNTTYPIKYCVNVNLKLQNK*YN*H---VVCS*QFNNMIYYSELIKIFNFN 364
           S     ++    Y I+Y V    K +   Y+ H   VVC  QF  M+ YS  + I   N
Sbjct: 204 SAAVMFYNKRLEYSIRYKVRERFKKREAIYSTHTICVVCMAQFVTMLVYSSGVLILRCN 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,521
Number of Sequences: 27780
Number of extensions: 246970
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)