Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20612
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 218 YRYNSKIKYYSYGKYNYKV 162
           Y YN+    Y+Y  YN K+
Sbjct: 322 YNYNNNNYKYNYNNYNKKL 340


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 200 FYYCICTRNPH 232
           F+YC  T+NP+
Sbjct: 312 FFYCAATKNPN 322


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +1

Query: 361 CVKIKDFYQF*IIYHIIKLLRTNNMLIVLFVLKFQIYVNAVLNRIS 498
           C+K+   ++    Y++I++     ML+++  + F +  +AV  R+S
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQSAVPARVS 275


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +1

Query: 361 CVKIKDFYQF*IIYHIIKLLRTNNMLIVLFVLKFQIYVNAVLNRIS 498
           C+K+   ++    Y++I++     ML+++  + F +  +AV  R+S
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQSAVPARVS 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,264
Number of Sequences: 438
Number of extensions: 3290
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)