Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20611
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    50   4e-07
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    30   0.28 
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   1.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.0  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.0  

>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +3

Query: 510 LKSMAPATSLALVATSEALKDANWTPKSEHCKEMTGVAIGMGMIDLNDVCITNEAL-KVG 686
           L+ +A  T LAL + +EALKDA W    E  K  TGV  G G+ +L+D    N  L K G
Sbjct: 73  LREVATFTQLALTSAAEALKDARWIDIDEQEKLATGVCFGTGIGNLDDALNENGVLNKAG 132

Query: 687 YNKVS 701
             KVS
Sbjct: 133 IRKVS 137



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +1

Query: 373 WTNILKGKCGIVALND-EEYINLPCRLAGLIPREKD 477
           W N+++GK GIV+L    EY  +P ++AG+IPR K+
Sbjct: 23  WRNLIQGKSGIVSLKGFPEYEQIPSKVAGVIPRGKE 58


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = +1

Query: 7   IATLNFTLNYALLFF--LNLSTSICLWKEISIYFIHKLY 117
           +AT N +L+Y ++ F  LNL  SI +WKE  +YFI  +Y
Sbjct: 415 VAT-NLSLSYLIISFLLLNLKESIHVWKE--LYFIVHIY 450


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -3

Query: 497 NAFSTIPSFSLGISPANLQGRFMYSSSLRATIPHFPFNMFVHTNSDPVPKGDTT 336
           N+F++I + S G+SP +    F   + LR TIP    N+     S  +P+ D+T
Sbjct: 21  NSFNSIHATSFGMSPQSWGNSFSGQAWLRDTIPSLS-NV---VESQTIPEEDST 70


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 6   NSNFKFYIKLCIAFFFKPFNFYLFVERNFYLLYP 107
           +SN K Y        F P+ F + + + +Y+ YP
Sbjct: 683 SSNLKSYYGCIPNIEFPPWGFKILIPKKYYVRYP 716


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 28  LNYALLFFLNLSTSICLWKEISIYFIHKLYKYNKG 132
           ++YA+L+F+N   S+  W  +S +F  KL K + G
Sbjct: 45  ISYAVLYFVN---SLLSWCMLSSWFNSKLSKLSAG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,703
Number of Sequences: 5004
Number of extensions: 46461
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)