Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20611
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542...    36   0.041

>02_01_0725 -
           5422477-5422641,5422721-5422792,5422876-5422958,
           5423113-5423173,5423305-5423381,5423456-5423522,
           5423770-5423803,5423894-5423974,5424285-5424436,
           5424529-5424615,5425019-5425126,5425906-5426259
          Length = 446

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 513 KSMAPATSLALVATSEALKDANWTPKSEHCKEMT 614
           KS++   + AL A  EAL+DANW P  +  KE T
Sbjct: 121 KSISGFIAYALCAADEALRDANWLPSEDEKKERT 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,852
Number of Sequences: 37544
Number of extensions: 253051
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)