Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20611
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_1690| Best HMM Match : DUF963 (HMM E-Value=2.1e-07) 30 2.1
SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27) 29 2.8
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8) 28 6.4
SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_37196| Best HMM Match : C1_4 (HMM E-Value=1.1) 28 6.4
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 6.4
SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98) 28 6.4
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 506 DFDNAFSTIPSFSLGISPANLQGRFMYSSSLRATIPHFPFNMFVHTNSDPVP 351
D + ST+ F G++ GRF+YS A P +PF + S +P
Sbjct: 402 DQQSQLSTMVCFICGVTQPATSGRFLYSRKHTAGDPFYPFLNSITPPSGAMP 453
>SB_1690| Best HMM Match : DUF963 (HMM E-Value=2.1e-07)
Length = 222
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q+QYP IRH VQ + P RH
Sbjct: 178 ITIRHVVQVQYPINIRHVVQVQYPITIRH 206
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q+QYP IRH VQ + P RH
Sbjct: 154 ITIRHVVQVQYPITIRHVVQVQYPITIRH 182
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 370 LIQIQYPKEIRHPVQ*RLPYV*RH 299
++Q+QYP IRH VQ P RH
Sbjct: 195 VVQVQYPITIRHVVQVEYPITIRH 218
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 118 ITIRHVVQVEYPINIRHVVQVEYPITIRH 146
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ + P RH
Sbjct: 142 ITIRHVVQVEYPITIRHVVQVQYPITIRH 170
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q+QYP IRH VQ + P RH
Sbjct: 166 ITIRHVVQVQYPITIRHVVQVQYPINIRH 194
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 11 ITIRHVVQVEYPITIRHVVQVEYPITIRH 39
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 46 ITIRHVVQVEYPITIRHVVQVEYPITIRH 74
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 58 ITIRHVVQVEYPITIRHVVQVEYPITIRH 86
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 70 ITIRHVVQVEYPITIRHVVQVEYPITIRH 98
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 82 ITIRHVVQVEYPITIRHVVQVEYPITNRH 110
>SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)
Length = 559
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 388 SICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
SI + ++Q++YP IRH VQ P RH
Sbjct: 142 SITIRHVVQVEYPITIRHVVQVEYPITMRH 171
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 388 SICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
SI + ++Q++YP IRH VQ P RH
Sbjct: 214 SITIRHVVQVEYPITIRHVVQVEYPITIRH 243
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ + P RH
Sbjct: 167 ITMRHVVQVEYPITIRHVVQVKYPITIRH 195
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 227 ITIRHVVQVEYPITIRHVVQVEYPITIRH 255
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 239 ITIRHVVQVEYPITIRHVVQVEYPITIRH 267
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 251 ITIRHVVQVEYPITIRHVVQVEYPITIRH 279
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 263 ITIRHVVQVEYPITIRHVVQVEYPITIRH 291
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 275 ITIRHVVQVEYPITIRHVVQVEYPITIRH 303
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 287 ITIRHVVQVEYPITIRHVVQVEYPITIRH 315
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 299 ITIRHVVQVEYPITIRHVVQVEYPITIRH 327
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 311 ITIRHVVQVEYPITIRHVVQVEYPITIRH 339
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 323 ITIRHVVQVEYPITIRHVVQVEYPITIRH 351
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 335 ITIRHVVQVEYPITIRHVVQVEYPITIRH 363
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 433 LCILHH*EPLYHIFPSICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
+ I H + Y I + ++Q++YP IRH VQ P RH
Sbjct: 359 ITIRHVVQVEYPITSDMLSRHVVQVEYPITIRHVVQVEYPITIRH 403
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 385 ICLSILIQIQYPKEIRHPVQ*RLPYV*RH 299
I + ++Q++YP IRH VQ P RH
Sbjct: 387 ITIRHVVQVEYPITIRHVVQVEYPITIRH 415
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 77 CGKKFLFTLSINSINTIKDHIKLNISDRKGI 169
C KK LFT+ +N K + + + DRKGI
Sbjct: 707 CSKKELFTVFMNVTAESKKELTVVVKDRKGI 737
>SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)
Length = 212
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Frame = +3
Query: 567 KDANWTPKSEHCKEMT--------GVAIGMGMIDLND 653
KDANW K + K +T G+ I MG++DL+D
Sbjct: 31 KDANWFDKEGNIKPLTVEELKAFLGITIMMGIVDLSD 67
>SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Frame = +3
Query: 567 KDANWTPKSEHCKEMT--------GVAIGMGMIDLND 653
KDANW K + K +T G+ I MG++DL+D
Sbjct: 98 KDANWFDKEGNIKPLTVEELKAFLGITIMMGIVDLSD 134
>SB_37196| Best HMM Match : C1_4 (HMM E-Value=1.1)
Length = 218
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Frame = +3
Query: 567 KDANWTPKSEHCKEMT--------GVAIGMGMIDLND 653
KDANW K + K +T G+ I MG++DL+D
Sbjct: 30 KDANWFDKEGNIKPLTVEELKAFLGITIMMGIVDLSD 66
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Frame = +3
Query: 567 KDANWTPKSEHCKEMT--------GVAIGMGMIDLND 653
KDANW K + K +T G+ I MG++DL+D
Sbjct: 20 KDANWFDKEGNIKPLTVEELKAFLGITIMMGIVDLSD 56
>SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)
Length = 221
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Frame = +3
Query: 567 KDANWTPKSEHCKEMT--------GVAIGMGMIDLND 653
KDANW K + K +T G+ I MG++DL+D
Sbjct: 30 KDANWFDKEGNIKPLTVEELKAFLGITIMMGIVDLSD 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,202
Number of Sequences: 59808
Number of extensions: 314793
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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