Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20611
         (703 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001769-1|AAN71524.1|  447|Drosophila melanogaster RH10820p pro...    54   1e-07
AE014297-314|AAF51982.1|  438|Drosophila melanogaster CG12170-PA...    54   1e-07
AY060428-1|AAL25467.1|   77|Drosophila melanogaster LD42550p pro...    29   4.6  

>BT001769-1|AAN71524.1|  447|Drosophila melanogaster RH10820p
           protein.
          Length = 447

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = +3

Query: 495 IVKIYLKSMAPATSLALVATSEALKDANWTPK--SEHCKEMTGVAIGMGMIDLNDVCITN 668
           + K  +K M+PAT LA++A  EAL      PK  SE   E  GV +GMGM DL +V    
Sbjct: 93  LTKSDIKLMSPATQLAVLAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYGAW 152

Query: 669 EALKVGYNKVS 701
             L+ GYN+VS
Sbjct: 153 NQLQRGYNRVS 163



 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 373 WTNILKGKCGIVALNDEEYINLPCRLAGLIPRE 471
           W  IL G+  I  L+  E+  LPC++A  IPRE
Sbjct: 54  WRRILAGESAISRLS-AEFKGLPCQVAAQIPRE 85


>AE014297-314|AAF51982.1|  438|Drosophila melanogaster CG12170-PA
           protein.
          Length = 438

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = +3

Query: 495 IVKIYLKSMAPATSLALVATSEALKDANWTPK--SEHCKEMTGVAIGMGMIDLNDVCITN 668
           + K  +K M+PAT LA++A  EAL      PK  SE   E  GV +GMGM DL +V    
Sbjct: 84  LTKSDIKLMSPATQLAVLAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYGAW 143

Query: 669 EALKVGYNKVS 701
             L+ GYN+VS
Sbjct: 144 NQLQRGYNRVS 154



 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 373 WTNILKGKCGIVALNDEEYINLPCRLAGLIPRE 471
           W  IL G+  I  L+  E+  LPC++A  IPRE
Sbjct: 45  WRRILAGESAISRLS-AEFKGLPCQVAAQIPRE 76


>AY060428-1|AAL25467.1|   77|Drosophila melanogaster LD42550p
           protein.
          Length = 77

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 483 C*KSIVKIYLKSMAPATSLALVATSEALKDANWTPKSEHCKEMTGVAIGMGMIDLNDVCI 662
           C   ++ I+L  M P+    L+     +    W P S  C++  G   G   +DL     
Sbjct: 17  CPLDVLSIFLPKMCPSYFPLLLEKLRVIHTRKWLPNS--CQKWAGGGAGRRRLDLGVAQR 74

Query: 663 TNE 671
           TNE
Sbjct: 75  TNE 77


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,599,870
Number of Sequences: 53049
Number of extensions: 447862
Number of successful extensions: 1174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)