Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20611
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] syntha...    44   1e-04
At3g57650.1 68416.m06423 acyl-CoA:1-acylglycerol-3-phosphate acy...    30   1.3  
At3g18215.1 68416.m02317 expressed protein contains Pfam profile...    29   3.0  
At2g44990.1 68415.m05602 dioxygenase-related low similarity to c...    29   3.0  

>At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] synthase
           II, putative similar to Swiss-Prot:P56902
           3-oxoacyl-[acyl-carrier-protein] synthase II (EC
           2.3.1.41) (Beta- ketoacyl-ACP synthase II) (KAS II)
           [Rhizobium meliloti]
          Length = 461

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 29/48 (60%)
 Frame = +3

Query: 513 KSMAPATSLALVATSEALKDANWTPKSEHCKEMTGVAIGMGMIDLNDV 656
           K++A     A+ A  EAL+DA W P  E  KE TGV+IG G+  + D+
Sbjct: 113 KAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDI 160


>At3g57650.1 68416.m06423 acyl-CoA:1-acylglycerol-3-phosphate
           acyltransferase, putative similar to
           acyl-CoA:1-acylglycerol-3-phosphate acyltransferase
           GI:4583544 from [Brassica napus]
          Length = 389

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 510 LKSMAPATSLALVATSEALKDANWTPKSEHCKEMTGVAIGMGMIDL 647
           +KS+A   S A V T  A+K  +W       K +T  A+G+G+I L
Sbjct: 302 IKSLAVVLSWACVLTLGAIKFLHWAQLFSSWKGITISALGLGIITL 347


>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 244

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -1

Query: 685 PTFNASFVIQTSFKSIIPMP-IATPVISLQCSLLGVQFASLSASDVATNANDVAGA 521
           P  N +  +QT   +I+    +AT  I+L CS++GV F S S+S  +T  N + G+
Sbjct: 57  PLKNGTLAVQTIRNNIMASTLLATTAITL-CSIIGV-FVSNSSSSKSTATNLIYGS 110


>At2g44990.1 68415.m05602 dioxygenase-related low similarity to
           carotenoid cleavage dioxygenase 1 [Arabidopsis thaliana]
           GI:3096910; contains Pfam profile PF03055: Retinal
           pigment epithelial membrane protein
          Length = 618

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 443 QGRFMYS---SSLRATIPHFPFNMFVHTNSD 360
           + ++MYS   S  R+ +PHFPF+M V  + D
Sbjct: 500 KNKYMYSAASSGTRSELPHFPFDMVVKFDLD 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,181,020
Number of Sequences: 28952
Number of extensions: 223659
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)