Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20609
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.63 
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   5.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.9  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   5.9  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   5.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.8  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 191 ILQHRRPRLPLMQLEAPCSFNFCSLRA 111
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 218 MESTDPQCHILQHRRPRLPLMQLEAPCSF 132
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 375 TSPVLDIAPGSDLFCFIWN*NA 440
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 4   NRVSVIPQFHSKTDSCVEESY--SKLP 78
           N+  ++P+    +D CV++SY  SK P
Sbjct: 223 NKARIVPKRSMSSDGCVDKSYQMSKTP 249


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 370 HHLMAWGLPWQQQSTVTQC--CRPLNFRSMLVQQRLCFLPLSR*AETEHG 227
           HHL+   LP   +S + +   C  L F+  L++  L  +P S  AE+ HG
Sbjct: 93  HHLLLSSLPCLPRSEIYRLANCNKLQFQISLLRCCLRIVPYS--AESIHG 140


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 124 QKLKEHGASSCISGKRGRRCCNIWHWGS 207
           Q   E  A +C  G  G  C  +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,766
Number of Sequences: 5004
Number of extensions: 33332
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)