Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20609
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     30   0.83 
09_06_0231 + 21733151-21734905                                         28   3.3  
12_02_1180 + 26727171-26727239,26728782-26729642                       28   4.4  
09_02_0338 + 7426999-7428322,7428390-7428646                           28   4.4  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     28   4.4  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   5.8  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   7.7  
02_05_0132 - 26109152-26109852,26109962-26110358                       27   7.7  

>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = +3

Query: 237 VSAQRESGRKHSRCCTSILRKFSGR------QHCVTVDCCC 341
           + +++++G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 18  LDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>09_06_0231 + 21733151-21734905
          Length = 584

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 377 CLASPHGVGATMAAAVNCDTMLPATKFP 294
           CL  P GVGA       CD M PAT  P
Sbjct: 47  CLRLPLGVGAGGCRVCACDEMDPATAAP 74


>12_02_1180 + 26727171-26727239,26728782-26729642
          Length = 309

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 282 CSSGCASCRFP--AELKPSTGATNGVNRPPVP 193
           C S  ASC  P  AEL P T A+ G  +P +P
Sbjct: 40  CLSTSASCTNPVSAELPPITMASQGAAKPKLP 71


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 221 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 81
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 288 CLCSSGCASCRFPAELKPSTGAT 220
           C C +GC  C++ +E++P+T  T
Sbjct: 14  CQCGNGCGGCKY-SEVEPTTTTT 35


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 106 RIARREQKLKEHGASSCISGKRGRRC 183
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 218 MESTDPQCHILQHRRPRLPL 159
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>02_05_0132 - 26109152-26109852,26109962-26110358
          Length = 365

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 285 LCSSGCASCRFPAELKPSTGATNGVNRP 202
           LC  G A   F A ++P +GAT    RP
Sbjct: 210 LCDFGFAHVGFSAAVRPPSGATRAWGRP 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,267,530
Number of Sequences: 37544
Number of extensions: 242440
Number of successful extensions: 580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)