Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20608
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) 31 0.37
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37
SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082) 31 0.37
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.65
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 29 0.86
SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 1.5
SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086) 28 2.0
SB_44542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 28 2.6
SB_23904| Best HMM Match : RdRP (HMM E-Value=0) 28 2.6
SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5) 27 3.5
SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_15036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 27 6.1
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12) 27 6.1
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 6.1
SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34) 27 6.1
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_40377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.1 bits (67), Expect = 0.28
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVK 173
YE+ I P + + W+ Y+E + K + V +++R L ++ ++L+ NY+K
Sbjct: 22 YEEEILRNPFSVKCWQRYVEHKTKTGSRSAVNMIYERALKELPG--SYKLWYNYLK 75
>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
Length = 498
Score = 30.7 bits (66), Expect = 0.37
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYVK 173
W+ Y++ E+ RV LF+RC++ L + W+ Y +Y++
Sbjct: 186 WRDYLDYEIANGEHRRVVILFERCVIACALYEDFWQRYASYME 228
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 GDESEKF*-KSRKALPEVSDEDIKHRTLEAVPELREGDEVHATHLQGENGAGLRLRPGQD 244
GD+S+ + ++ + + SD ++++ + + ++GD QGE G GLRL PG D
Sbjct: 330 GDQSDSYQGQTSQGFGQASDLS-RYQSEDTASQPQQGDGQVGVLQQGEQGVGLRL-PGGD 387
Query: 245 RSGL 256
G+
Sbjct: 388 EGGV 391
>SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082)
Length = 319
Score = 30.7 bits (66), Expect = 0.37
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYVK 173
W+ Y++ E+ RV LF+RC++ L + W+ Y +Y++
Sbjct: 239 WRDYLDYEIANGEHRRVVILFERCVIACALYEDFWQRYASYME 281
Score = 29.5 bits (63), Expect = 0.86
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 69 EMKARNFERVEKLFQRCLMKIL-NIELWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKI 245
E K N E +++F++ + I +++LW YLN+ + P E M + ++ A+
Sbjct: 2 ERKNGNIEAAKEVFEQGVKAIACSVDLWVHYLNFSSQATKGQPDGPEIMRRLFERAIATA 61
Query: 246 GLD 254
G D
Sbjct: 62 GQD 64
>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 29.9 bits (64), Expect = 0.65
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 5 VREVDNGIPDHRTLLENIYRTGDESEKF*KSRKALPEVSDED---IKHRTLEAVPEL 166
+ EVD P H L N Y ES K K K +P + D+ I H TL+ L
Sbjct: 796 ILEVDLEYPRHLHDLHNDYPLAPESAKVDKVEKLIPNLGDKSKYAIHHETLKLYESL 852
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 29.5 bits (63), Expect = 0.86
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 5 VREVDNGIPDHRTLLENIYRTGDESEKF*KSRKALPEVSDED---IKHRTL 148
+ EVD P H L N Y ES K K K +P +SD + H TL
Sbjct: 896 ILEVDLEYPHHLHDLHNDYPLAPESVKVDKVEKLIPNLSDNTKYVVHHETL 946
>SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 305 EAVGSYAENQKISAVQKI 358
E+ GSYAENQKI+ ++++
Sbjct: 192 ESTGSYAENQKIAMIRRV 209
>SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 5 VREVDNGIPDHRTLLENIYRTGDESEKF*KSRKALPEVSDED---IKHRTL 148
+ EVD P H L N Y ES K K K +P + D+ + H TL
Sbjct: 722 ILEVDLEYPHHLHDLHNDYPLAPESVKVDKVEKVIPNLGDKTKCVVHHETL 772
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 5 VREVDNGIPDHRTLLENIYRTGDESEKF*KSRKALPEVSDED---IKHRTL 148
+ EVD P H +L N Y ES K K +P ++D+ + H TL
Sbjct: 625 ILEVDLEYPHHLHVLHNDYPLAPESVKVDNVEKLIPNLNDKTKYVVHHETL 675
>SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)
Length = 809
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 9 EKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIE----LWRLYLNYVKE 176
E +++ +P W +YI+ K + + V ++F+R + L+ L++ YL++ +E
Sbjct: 376 ESVLSNYPKRTDIWSVYIDMMSKQGHPDTVRQIFERVIHMNLSSRKMKFLFKKYLDFERE 435
>SB_44542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 3 MYEKLITAFPTTGR-----YWKIYIEQEMKARNFERVEKLFQRCLMKILNIE 143
+YEK +T P WK YI+ E+ F+ L++R L + +++
Sbjct: 366 IYEKFLTFNPANCTTWVKVLWKAYIDFEINQEEFDHTRDLYERLLKRTNHVK 417
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 6 YEK--LITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKET 179
Y+K L+ T ++ K+ +++ +K F R+ K + CL+ L I R++L YVK
Sbjct: 199 YQKMPLVICSWTFSKWLKLKMKRLLKIPLFLRINKKLE-CLICQLLINFIRIFLRYVKAK 257
Query: 180 KCML 191
+L
Sbjct: 258 SSVL 261
>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
Length = 1511
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 92 KSRKALPEVSDEDIKHRTLEAVPELREGDEVHA 190
+SR+ALPE D ++ T + E R+G E+ A
Sbjct: 1370 RSRRALPESDIRDTEYETFMSALEPRDGVELQA 1402
>SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 27.9 bits (59), Expect = 2.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -1
Query: 353 FERRISSGSRRMNQRLRHSSETSRSRSILGKRGVQTYLVQG--EVVGLRHFLLVSG*HAL 180
F + + S + + RH+ E + S+ G R Q L++G E++ L H S L
Sbjct: 534 FSKAVPSFKSSLEEYGRHTPEVTDSKDKAGIRLCQDRLLEGELELIDLLHVSAPSIKPKL 593
Query: 179 RLLHVVQV-QPPEF 141
LL+ QV +PP F
Sbjct: 594 TLLNKPQVIKPPLF 607
>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
Length = 895
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 96 VEKLFQRCLMKILNIELWRLYLNYVKETKCMLPTYKEKM 212
V F RCL+ + ++ RL Y+ T+C+L Y +++
Sbjct: 660 VYSAFTRCLLGVYSMFTRRLLGVYLTFTRCLLDVYSKQL 698
>SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 199 TRRKWRRPTTSPWTR 243
TRRKWR+ T+ WTR
Sbjct: 15 TRRKWRKWTSRRWTR 29
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 103 FSTLSKFLAFISCSIYIFQ*RPVVGN 26
+S L LAFI+ IY+F+ R VVGN
Sbjct: 770 WSHLLPALAFIAYFIYVFKDRAVVGN 795
>SB_15036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 2 HVREVDNGIPDHRTLLENIYRTGDESEKF*KSRKALPEVSDEDIKHRTLE 151
H+ V G+P ++ + ++ KF K+R+ E++DE +K +E
Sbjct: 21 HLNGVTEGVPKIEEDVQFMVERWNKINKFYKNRRQQVELADEKVKKYRIE 70
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 78 ARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKCMLPTYKEKMAQAYDF 230
AR + +LF + +L + L + V+ +C+LP+++E +A+A F
Sbjct: 247 ARAMNILTRLFPEQKLNVLELILKGCSGDIVQTIECVLPSHEEALARAQMF 297
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 11 EVDNGIPDHRTLLENIYRTGDESEKF*KSRKALPEVSDEDIKHRTLEAVPELREGDE 181
E +N I D + LE I ++GD+ ++F + DE+ KH+ A+ +E +E
Sbjct: 370 ETNNQIGDLKKQLE-ILKSGDQQKRFDTLWVKAKSMMDEETKHKE-NAIKRSKEFEE 424
>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
Length = 655
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 113 EVSDEDIKHRTLEAVPELREGDEVHATH 196
EV+D+ ++H VP + D +HAT+
Sbjct: 318 EVNDKGVEHSGASVVPAPQAADSLHATN 345
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 220 PTTSPWTR*VWTP 258
PTT PWT WTP
Sbjct: 87 PTTGPWTTRPWTP 99
>SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)
Length = 792
Score = 26.6 bits (56), Expect = 6.1
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 5 VREVDNGIPDHRTLLENIYRTGDESEKF*KSRKALPEVSDED---IKHRTLEAVPEL 166
V EVD P H L N Y ES K K K +P ++++ + H TL+ L
Sbjct: 516 VLEVDLEYPRHLHDLHNDYPLAPESIKIGKVDKLIPNLNNKTKYVVHHETLKLYESL 572
>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 304 DTLQKRHVVVPYWVSVESRPILSRA 230
D+ Q+RH++ P W ++ PI +R+
Sbjct: 789 DSAQRRHLMCPGWGCTQTEPINNRS 813
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -3
Query: 261 AWSPDLS-CPGRSRRPAPFSPCKWVA 187
AW P S C R PAP PC VA
Sbjct: 4110 AWGPKRSGCLAREPSPAPSLPCDLVA 4135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,825,977
Number of Sequences: 59808
Number of extensions: 232933
Number of successful extensions: 748
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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