Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20608
(359 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15782-1|AAA61417.1| 717|Homo sapiens cleavage stimulation fact... 140 1e-33
BC108319-1|AAI08320.1| 717|Homo sapiens cleavage stimulation fa... 140 1e-33
AL121926-1|CAC48252.1| 708|Homo sapiens dJ85M6.1 (cleavage stim... 140 1e-33
BC125127-1|AAI25128.1| 629|Homo sapiens PRPF39 protein protein. 43 3e-04
BC125126-1|AAI25127.1| 629|Homo sapiens PRPF39 protein protein. 43 3e-04
BC059948-1|AAH59948.1| 103|Homo sapiens cleavage stimulation fa... 40 0.003
BC009792-1|AAH09792.1| 103|Homo sapiens cleavage stimulation fa... 40 0.003
BC051886-1|AAH51886.1| 479|Homo sapiens PRPF39 protein protein. 35 0.066
AL035454-2|CAI42112.1| 836|Homo sapiens Crn, crooked neck-like ... 32 0.47
AL035454-1|CAI42113.1| 848|Homo sapiens Crn, crooked neck-like ... 32 0.47
AK023728-1|BAB14659.1| 512|Homo sapiens protein ( Homo sapiens ... 32 0.47
AK023246-1|BAB14485.1| 564|Homo sapiens protein ( Homo sapiens ... 32 0.47
AK022908-1|BAB14303.1| 564|Homo sapiens protein ( Homo sapiens ... 32 0.47
AF318303-1|AAK01925.1| 848|Homo sapiens CGI-201 protein, type I... 32 0.47
AF318302-1|AAK01924.1| 687|Homo sapiens CGI-201 protein, short ... 32 0.47
AF255443-1|AAF65571.2| 836|Homo sapiens CGI-201 protein protein. 32 0.47
AF111802-1|AAL39004.1| 687|Homo sapiens MSTP021 protein. 32 0.47
AB016840-1|BAC53587.1| 687|Homo sapiens crn protein. 32 0.47
AK125035-1|BAC86028.1| 1253|Homo sapiens protein ( Homo sapiens ... 31 1.4
BC126126-1|AAI26127.1| 1030|Homo sapiens C1orf175 protein protein. 29 4.3
D80007-1|BAA11502.1| 1884|Homo sapiens KIAA0185 protein. 28 7.6
D63879-1|BAA09929.1| 963|Homo sapiens KIAA0156 protein. 28 7.6
BC111983-1|AAI11984.1| 963|Homo sapiens squamous cell carcinoma... 28 7.6
BC103706-1|AAI03707.1| 615|Homo sapiens SART3 protein protein. 28 7.6
BC093784-1|AAH93784.1| 963|Homo sapiens squamous cell carcinoma... 28 7.6
BC053877-1|AAH53877.1| 605|Homo sapiens solute carrier family 4... 28 7.6
BC033858-1|AAH33858.2| 677|Homo sapiens SLC44A3 protein protein. 28 7.6
BC032601-1|AAH32601.1| 615|Homo sapiens SART3 protein protein. 28 7.6
AY358659-1|AAQ89022.1| 445|Homo sapiens SGRD558 protein. 28 7.6
AL603983-1|CAI15102.1| 1871|Homo sapiens programmed cell death 1... 28 7.6
AL591408-6|CAI16749.1| 1871|Homo sapiens programmed cell death 1... 28 7.6
AL359554-1|CAC36091.1| 428|Homo sapiens dJ639P13.1 (novel prote... 28 7.6
AL139339-5|CAH71487.1| 1871|Homo sapiens programmed cell death 1... 28 7.6
AB020880-1|BAA78384.1| 963|Homo sapiens squamous cell carcinoma... 28 7.6
>U15782-1|AAA61417.1| 717|Homo sapiens cleavage stimulation factor
77kDa subunit protein.
Length = 717
Score = 140 bits (339), Expect = 1e-33
Identities = 57/83 (68%), Positives = 77/83 (92%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKC 185
YE+L+ FP++GR+WK+YIE E+KA+N+++VEKLFQRCLMK+L+I+LW+ YL+YV+ETK
Sbjct: 54 YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG 113
Query: 186 MLPTYKEKMAQAYDFALDKIGLD 254
LP+YKEKMAQAYDFALDKIG++
Sbjct: 114 KLPSYKEKMAQAYDFALDKIGME 136
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/41 (58%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Frame = +2
Query: 242 DRSGLH--AYPIWNDYVTFLKSVEAVGSYAENQKISAVQKI 358
D+ G+ +Y IW DY+ FLK VEAVGSYAENQ+I+AV+++
Sbjct: 131 DKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 171
>BC108319-1|AAI08320.1| 717|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 3, 77kDa protein.
Length = 717
Score = 140 bits (339), Expect = 1e-33
Identities = 57/83 (68%), Positives = 77/83 (92%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKC 185
YE+L+ FP++GR+WK+YIE E+KA+N+++VEKLFQRCLMK+L+I+LW+ YL+YV+ETK
Sbjct: 54 YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG 113
Query: 186 MLPTYKEKMAQAYDFALDKIGLD 254
LP+YKEKMAQAYDFALDKIG++
Sbjct: 114 KLPSYKEKMAQAYDFALDKIGME 136
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/41 (58%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Frame = +2
Query: 242 DRSGLH--AYPIWNDYVTFLKSVEAVGSYAENQKISAVQKI 358
D+ G+ +Y IW DY+ FLK VEAVGSYAENQ+I+AV+++
Sbjct: 131 DKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 171
>AL121926-1|CAC48252.1| 708|Homo sapiens dJ85M6.1 (cleavage
stimulation factor, 3' pre-RNA, subunit 3, 77kD)
protein.
Length = 708
Score = 140 bits (339), Expect = 1e-33
Identities = 57/83 (68%), Positives = 77/83 (92%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKC 185
YE+L+ FP++GR+WK+YIE E+KA+N+++VEKLFQRCLMK+L+I+LW+ YL+YV+ETK
Sbjct: 45 YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG 104
Query: 186 MLPTYKEKMAQAYDFALDKIGLD 254
LP+YKEKMAQAYDFALDKIG++
Sbjct: 105 KLPSYKEKMAQAYDFALDKIGME 127
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/41 (58%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Frame = +2
Query: 242 DRSGLH--AYPIWNDYVTFLKSVEAVGSYAENQKISAVQKI 358
D+ G+ +Y IW DY+ FLK VEAVGSYAENQ+I+AV+++
Sbjct: 122 DKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 162
>BC125127-1|AAI25128.1| 629|Homo sapiens PRPF39 protein protein.
Length = 629
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKI-LNIELWRLYLNYVKET 179
+++ +P YWK Y + E + N + +++++R L I L+++LW Y+N++KET
Sbjct: 78 FDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKET 136
Score = 35.1 bits (77), Expect = 0.066
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYVK 173
WK Y+E E++ ERV LF+RC++ L E W Y Y++
Sbjct: 316 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYME 358
>BC125126-1|AAI25127.1| 629|Homo sapiens PRPF39 protein protein.
Length = 629
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKI-LNIELWRLYLNYVKET 179
+++ +P YWK Y + E + N + +++++R L I L+++LW Y+N++KET
Sbjct: 78 FDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKET 136
Score = 35.1 bits (77), Expect = 0.066
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYVK 173
WK Y+E E++ ERV LF+RC++ L E W Y Y++
Sbjct: 316 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYME 358
>BC059948-1|AAH59948.1| 103|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 3, 77kDa protein.
Length = 103
Score = 39.5 bits (88), Expect = 0.003
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEM 74
YE+L+ FP++GR+WK+YIE E+
Sbjct: 54 YERLVAQFPSSGRFWKLYIEAEV 76
>BC009792-1|AAH09792.1| 103|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 3, 77kDa protein.
Length = 103
Score = 39.5 bits (88), Expect = 0.003
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEM 74
YE+L+ FP++GR+WK+YIE E+
Sbjct: 54 YERLVAQFPSSGRFWKLYIEAEV 76
>BC051886-1|AAH51886.1| 479|Homo sapiens PRPF39 protein protein.
Length = 479
Score = 35.1 bits (77), Expect = 0.066
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYVK 173
WK Y+E E++ ERV LF+RC++ L E W Y Y++
Sbjct: 166 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYME 208
>AL035454-2|CAI42112.1| 836|Homo sapiens Crn, crooked neck-like 1
(Drosophila) protein.
Length = 836
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 667 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 700
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 595 KLFKVYIELELQLREFDRCRKLYEKFL 621
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 286 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 340
>AL035454-1|CAI42113.1| 848|Homo sapiens Crn, crooked neck-like 1
(Drosophila) protein.
Length = 848
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 679 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 712
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 607 KLFKVYIELELQLREFDRCRKLYEKFL 633
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 298 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 352
>AK023728-1|BAB14659.1| 512|Homo sapiens protein ( Homo sapiens
cDNA FLJ13666 fis, clone PLACE1011664, moderately
similar to CROOKED NECK PROTEIN. ).
Length = 512
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 343 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 376
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 271 KLFKVYIELELQLREFDRCRKLYEKFL 297
>AK023246-1|BAB14485.1| 564|Homo sapiens protein ( Homo sapiens
cDNA FLJ13184 fis, clone NT2RP3004206, moderately
similar to CROOKED NECK PROTEIN. ).
Length = 564
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 395 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 428
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 323 KLFKVYIELELQLREFDRCRKLYEKFL 349
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 14 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 68
>AK022908-1|BAB14303.1| 564|Homo sapiens protein ( Homo sapiens
cDNA FLJ12846 fis, clone NT2RP2003308, moderately
similar to CROOKED NECK PROTEIN. ).
Length = 564
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 395 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 428
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 323 KLFKVYIELELQLREFDRCRKLYEKFL 349
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 14 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 68
>AF318303-1|AAK01925.1| 848|Homo sapiens CGI-201 protein, type II
protein.
Length = 848
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 679 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 712
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 607 KLFKVYIELELQLREFDRCRKLYEKFL 633
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 298 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 352
>AF318302-1|AAK01924.1| 687|Homo sapiens CGI-201 protein, short
form protein.
Length = 687
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 518 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 551
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 446 KLFKVYIELELQLREFDRCRKLYEKFL 472
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 137 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 191
>AF255443-1|AAF65571.2| 836|Homo sapiens CGI-201 protein protein.
Length = 836
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 667 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 700
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 595 KLFKVYIELELQLREFDRCRKLYEKFL 621
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 286 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 340
>AF111802-1|AAL39004.1| 687|Homo sapiens MSTP021 protein.
Length = 687
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 518 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 551
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 446 KLFKVYIELELQLREFDRCRKLYEKFL 472
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 137 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 191
>AB016840-1|BAC53587.1| 687|Homo sapiens crn protein.
Length = 687
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E++ ER L++R L + ++++W
Sbjct: 518 WKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVW 551
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K+YIE E++ R F+R KL+++ L
Sbjct: 446 KLFKVYIELELQLREFDRCRKLYEKFL 472
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W Y+N+
Sbjct: 137 IWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINF 191
>AK125035-1|BAC86028.1| 1253|Homo sapiens protein ( Homo sapiens cDNA
FLJ43045 fis, clone BRTHA3003490. ).
Length = 1253
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 30 PTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKI-LNIELWR 152
PT WKI I E+ + V +L+QR L K+ L LW+
Sbjct: 1166 PTCLATWKIAIAAEIVLKGQREVHRLYQRALQKLPLCASLWK 1207
>BC126126-1|AAI26127.1| 1030|Homo sapiens C1orf175 protein protein.
Length = 1030
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 134 KHRTLEAVPELREGDEVHATHLQGENGAGLRLRP 235
+HR LE +PE+ +G + +H+Q + L P
Sbjct: 736 RHRALEVIPEIMQGIYMQLSHIQEPRARQVALLP 769
>D80007-1|BAA11502.1| 1884|Homo sapiens KIAA0185 protein.
Length = 1884
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIE----LWRLYLNYV 170
++E ++ +P W +YI+ +K + + V +F+R + L + ++ YL+Y
Sbjct: 1796 IFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYE 1855
Query: 171 KE 176
K+
Sbjct: 1856 KQ 1857
>D63879-1|BAA09929.1| 963|Homo sapiens KIAA0156 protein.
Length = 963
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYV 170
++ YI+ EMK + R++ +F+R L++ L +LW Y Y+
Sbjct: 313 YQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYL 354
>BC111983-1|AAI11984.1| 963|Homo sapiens squamous cell carcinoma
antigen recognized by T cells 3 protein.
Length = 963
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYV 170
++ YI+ EMK + R++ +F+R L++ L +LW Y Y+
Sbjct: 313 YQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYL 354
>BC103706-1|AAI03707.1| 615|Homo sapiens SART3 protein protein.
Length = 615
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYV 170
++ YI+ EMK + R++ +F+R L++ L +LW Y Y+
Sbjct: 313 YQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYL 354
>BC093784-1|AAH93784.1| 963|Homo sapiens squamous cell carcinoma
antigen recognized by T cells 3 protein.
Length = 963
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYV 170
++ YI+ EMK + R++ +F+R L++ L +LW Y Y+
Sbjct: 313 YQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYL 354
>BC053877-1|AAH53877.1| 605|Homo sapiens solute carrier family 44,
member 3 protein.
Length = 605
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 144 LWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGLDSTL 263
LW LY +Y + L T +E M FA+ G+ + L
Sbjct: 211 LWWLYYDYTNDLSIELDTERENMKCVLGFAIVSTGITAVL 250
>BC033858-1|AAH33858.2| 677|Homo sapiens SLC44A3 protein protein.
Length = 677
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 144 LWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGLDSTL 263
LW LY +Y + L T +E M FA+ G+ + L
Sbjct: 283 LWWLYYDYTNDLSIELDTERENMKCVLGFAIVSTGITAVL 322
>BC032601-1|AAH32601.1| 615|Homo sapiens SART3 protein protein.
Length = 615
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYV 170
++ YI+ EMK + R++ +F+R L++ L +LW Y Y+
Sbjct: 313 YQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYL 354
>AY358659-1|AAQ89022.1| 445|Homo sapiens SGRD558 protein.
Length = 445
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 144 LWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGLDSTL 263
LW LY +Y + L T +E M FA+ G+ + L
Sbjct: 51 LWWLYYDYTNDLSIELDTERENMKCVLGFAIVSTGITAVL 90
>AL603983-1|CAI15102.1| 1871|Homo sapiens programmed cell death 11
protein.
Length = 1871
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIE----LWRLYLNYV 170
++E ++ +P W +YI+ +K + + V +F+R + L + ++ YL+Y
Sbjct: 1783 IFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYE 1842
Query: 171 KE 176
K+
Sbjct: 1843 KQ 1844
>AL591408-6|CAI16749.1| 1871|Homo sapiens programmed cell death 11
protein.
Length = 1871
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIE----LWRLYLNYV 170
++E ++ +P W +YI+ +K + + V +F+R + L + ++ YL+Y
Sbjct: 1783 IFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYE 1842
Query: 171 KE 176
K+
Sbjct: 1843 KQ 1844
>AL359554-1|CAC36091.1| 428|Homo sapiens dJ639P13.1 (novel protein
similar to rat transporter-like protein (CTL1)) protein.
Length = 428
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 144 LWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGLDSTL 263
LW LY +Y + L T +E M FA+ G+ + L
Sbjct: 35 LWWLYYDYTNDLSIELDTERENMKCVLGFAIVSTGITAVL 74
>AL139339-5|CAH71487.1| 1871|Homo sapiens programmed cell death 11
protein.
Length = 1871
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIE----LWRLYLNYV 170
++E ++ +P W +YI+ +K + + V +F+R + L + ++ YL+Y
Sbjct: 1783 IFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYE 1842
Query: 171 KE 176
K+
Sbjct: 1843 KQ 1844
>AB020880-1|BAA78384.1| 963|Homo sapiens squamous cell carcinoma
antigen SART-3 protein.
Length = 963
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMK-ILNIELWRLYLNYV 170
++ YI+ EMK + R++ +F+R L++ L +LW Y Y+
Sbjct: 313 YQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYL 354
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,508,880
Number of Sequences: 237096
Number of extensions: 1088473
Number of successful extensions: 3573
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3564
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -