Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20608
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical pr... 122 1e-28
U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein. 122 1e-28
L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage stimul... 122 1e-28
U64842-1|AAB37083.2| 710|Caenorhabditis elegans Hypothetical pr... 33 0.079
AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical ... 30 0.56
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 29 1.3
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr... 28 1.7
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 28 1.7
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 28 1.7
U80445-1|AAB37794.1| 855|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z75710-8|CAO82023.1| 394|Caenorhabditis elegans Hypothetical pr... 26 6.9
U58758-14|AAB93433.2| 842|Caenorhabditis elegans High incidence... 26 9.1
AF178755-1|AAD52669.1| 842|Caenorhabditis elegans HIM-14 protei... 26 9.1
AF036692-4|AAS47682.1| 318|Caenorhabditis elegans Serpentine re... 26 9.1
>Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical
protein F28C6.6 protein.
Length = 735
Score = 122 bits (293), Expect = 1e-28
Identities = 49/83 (59%), Positives = 67/83 (80%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKC 185
YE L+ FP +GRYWK YIE E++++NFE VEKLF RCL+ +LNI+LW+ Y++YV ETK
Sbjct: 42 YESLVKQFPNSGRYWKAYIEHELRSKNFENVEKLFSRCLVSVLNIDLWKCYIHYVFETKG 101
Query: 186 MLPTYKEKMAQAYDFALDKIGLD 254
Y+E+MA+AYDFAL+K+G+D
Sbjct: 102 QRDQYREEMAKAYDFALEKVGMD 124
Score = 49.2 bits (112), Expect = 9e-07
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +2
Query: 254 LHAYPIWNDYVTFLKSVEAVGSYAENQKISAVQKI 358
+ AY I+ +Y+ FLK V AVG YAENQ+I+AV+KI
Sbjct: 125 VQAYSIFTEYIAFLKKVPAVGQYAENQRITAVRKI 159
>U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein.
Length = 730
Score = 122 bits (293), Expect = 1e-28
Identities = 49/83 (59%), Positives = 67/83 (80%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKC 185
YE L+ FP +GRYWK YIE E++++NFE VEKLF RCL+ +LNI+LW+ Y++YV ETK
Sbjct: 37 YESLVKQFPNSGRYWKAYIEHELRSKNFENVEKLFSRCLVSVLNIDLWKCYIHYVFETKG 96
Query: 186 MLPTYKEKMAQAYDFALDKIGLD 254
Y+E+MA+AYDFAL+K+G+D
Sbjct: 97 QRDQYREEMAKAYDFALEKVGMD 119
Score = 49.2 bits (112), Expect = 9e-07
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +2
Query: 254 LHAYPIWNDYVTFLKSVEAVGSYAENQKISAVQKI 358
+ AY I+ +Y+ FLK V AVG YAENQ+I+AV+KI
Sbjct: 120 VQAYSIFTEYIAFLKKVPAVGQYAENQRITAVRKI 154
>L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage
stimulation factor protein.
Length = 735
Score = 122 bits (293), Expect = 1e-28
Identities = 49/83 (59%), Positives = 67/83 (80%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKC 185
YE L+ FP +GRYWK YIE E++++NFE VEKLF RCL+ +LNI+LW+ Y++YV ETK
Sbjct: 42 YESLVKQFPNSGRYWKAYIEHELRSKNFENVEKLFSRCLVSVLNIDLWKCYIHYVFETKG 101
Query: 186 MLPTYKEKMAQAYDFALDKIGLD 254
Y+E+MA+AYDFAL+K+G+D
Sbjct: 102 QRDQYREEMAKAYDFALEKVGMD 124
Score = 49.2 bits (112), Expect = 9e-07
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +2
Query: 254 LHAYPIWNDYVTFLKSVEAVGSYAENQKISAVQKI 358
+ AY I+ +Y+ FLK V AVG YAENQ+I+AV+KI
Sbjct: 125 VQAYSIFTEYIAFLKKVPAVGQYAENQRITAVRKI 159
>U64842-1|AAB37083.2| 710|Caenorhabditis elegans Hypothetical
protein F25B4.5 protein.
Length = 710
Score = 32.7 bits (71), Expect = 0.079
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKI-LNIELWRLYLNYVKET 179
W Y++ E+K + ERV+ LF RCL+ L E W Y + +T
Sbjct: 387 WMSYLDFEIKEGHEERVKILFDRCLIPCSLYEEFWIKYARWTWKT 431
>AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical
protein M03F8.3 protein.
Length = 744
Score = 29.9 bits (64), Expect = 0.56
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ IT P ++W Y E N ++F+R + + W+ Y+N+
Sbjct: 142 VFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYINF 196
Score = 29.1 bits (62), Expect = 0.98
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E+ E+ L++ L + +I++W
Sbjct: 525 WKAYIDFEIACEEHEKARDLYETLLQRTNHIKVW 558
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ ++ YI+ E++ R F+R KL+++ L
Sbjct: 453 KLFRAYIDLELQLREFDRCRKLYEKFL 479
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 218 GLRLRPGQDRSGLHAYPIWNDYVTFLKSVEAVGSYAENQKISAV 349
GLR R ++S L A +WN+ VT + EN KI +
Sbjct: 340 GLRHREAVEKSSLSAMVLWNNNVTGASMDSLAEALIENTKIETL 383
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 218 GLRLRPGQDRSGLHAYPIWNDYVTFLKSVEAVGSYAENQKISAV 349
GLR R ++S L A +WN+ VT + EN KI +
Sbjct: 340 GLRHREAVEKSSLSAMVLWNNNVTGASMDSLAEALIENTKIETL 383
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 218 GLRLRPGQDRSGLHAYPIWNDYVTFLKSVEAVGSYAENQKISAV 349
GLR R ++S L A +WN+ VT + EN KI +
Sbjct: 340 GLRHREAVEKSSLSAMVLWNNNVTGASMDSLAEALIENTKIETL 383
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 218 GLRLRPGQDRSGLHAYPIWNDYVTFLKSVEAVGSYAENQKISAV 349
GLR R ++S L A +WN+ VT + EN KI +
Sbjct: 340 GLRHREAVEKSSLSAMVLWNNNVTGASMDSLAEALIENTKIETL 383
>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
C16A3.3 protein.
Length = 1743
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQR 116
+ E L+TA P W +Y E +K E K+ +R
Sbjct: 1652 LLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLER 1689
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 309 PLVHTPRTRRYPPFKR 356
P+ +T RTRRYPP K+
Sbjct: 94 PIGYTKRTRRYPPIKK 109
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 309 PLVHTPRTRRYPPFKR 356
P+ +T RTRRYPP K+
Sbjct: 94 PIGYTKRTRRYPPIKK 109
>U80445-1|AAB37794.1| 855|Caenorhabditis elegans Hypothetical
protein C50F2.3 protein.
Length = 855
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKI---LNIELWRLYLNYV 170
YE+ + R W Y E +K ++F R L + ++ +W LY+ ++
Sbjct: 106 YERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMRIWTLYIGFL 163
>Z75710-8|CAO82023.1| 394|Caenorhabditis elegans Hypothetical
protein D1081.10 protein.
Length = 394
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = -1
Query: 224 VGLRHFLLVSG*HALRLLHVVQVQPPEFDV*YLHQTPLEELFDSFKISRFHLLFDIYFPV 45
+ +R F +G + + V+P FD+ L + E ++ K+ RFHL+ + +
Sbjct: 268 LSIRIFFFTNGESCIFIRGAPLVKPDSFDIDRLIGIGVLESTETLKLFRFHLVHEYMDEM 327
Query: 44 TSCGRECRYQLLV 6
CR ++ +
Sbjct: 328 CKIMGICRRKMRI 340
>U58758-14|AAB93433.2| 842|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 14 protein.
Length = 842
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +3
Query: 9 EKLITAFPT------TGRYWKIYI-EQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
E L+TAFP + +Y+ E+++++ V + + CL + L + + L Y
Sbjct: 123 EALMTAFPEASLQSISSKYFNSERGERQLQSLMNAEVSTVSEGCLRRTLALGALAVLLKY 182
Query: 168 VKETKCM 188
+ ET+C+
Sbjct: 183 IHETRCV 189
>AF178755-1|AAD52669.1| 842|Caenorhabditis elegans HIM-14 protein
protein.
Length = 842
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +3
Query: 9 EKLITAFPT------TGRYWKIYI-EQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
E L+TAFP + +Y+ E+++++ V + + CL + L + + L Y
Sbjct: 123 EALMTAFPEASLQSISSKYFNSERGERQLQSLMNAEVSTVSEGCLRRTLALGALAVLLKY 182
Query: 168 VKETKCM 188
+ ET+C+
Sbjct: 183 IHETRCV 189
>AF036692-4|AAS47682.1| 318|Caenorhabditis elegans Serpentine
receptor, class x protein14 protein.
Length = 318
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 236 GQDRSGLHAYPIWNDYVTFLKSVEAVGS 319
G + SG+ Y +W T+ +SVEA GS
Sbjct: 78 GLNFSGILIYFLWVTPATYTQSVEAAGS 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,596
Number of Sequences: 27780
Number of extensions: 177612
Number of successful extensions: 575
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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