Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20608
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.63 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   0.83 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   4.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   7.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 17  DNGIPDHRTLLENIYRT 67
           DN +  H  LL N+Y T
Sbjct: 395 DNALASHNNLLNNVYST 411


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 211 WRRPTT---SPWTR*VWTPRLPNMERLR 285
           +R+P+T   +PW R ++  RLP +  +R
Sbjct: 324 YRKPSTHKMAPWVRKIFIRRLPKLLLMR 351


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 298 LQKRHVVVPYWVSVESRPILS 236
           +Q+  + VPYW+S  +  +L+
Sbjct: 339 MQEMSIEVPYWISTTTSFVLN 359


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 107 ELFDSFKISRFHLLFDIYF 51
           +L DS+ +S F LLF ++F
Sbjct: 443 QLLDSYAVSGFCLLFLMFF 461


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 107 ELFDSFKISRFHLLFDIYF 51
           +L DS+ +S F LLF ++F
Sbjct: 496 QLLDSYAVSGFCLLFLMFF 514


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 130 IFIRHLWKSFSTLSKFLAFISC 65
           IF+   +KSFS L+  L F +C
Sbjct: 135 IFLLIRFKSFSLLNFNLLFFNC 156


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/43 (20%), Positives = 18/43 (41%)
 Frame = +3

Query: 144 LWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGLDSTLTQY 272
           L++  L+Y    K + P Y +   Q      + + +D   T +
Sbjct: 423 LYQKILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYTYF 465


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/43 (20%), Positives = 18/43 (41%)
 Frame = +3

Query: 144 LWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGLDSTLTQY 272
           L++  L+Y    K + P Y +   Q      + + +D   T +
Sbjct: 423 LYQNILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYTYF 465


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 252 PDLSCPGRSRRPAPFS 205
           PDLS P +  R  PFS
Sbjct: 68  PDLSIPMQLGRRQPFS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,806
Number of Sequences: 438
Number of extensions: 2248
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)