Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20608
(359 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17760.1 68414.m02198 suppressor of forked protein family pro... 70 4e-13
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 35 0.014
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c... 31 0.17
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c... 31 0.23
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 30 0.40
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 29 0.70
At3g51110.1 68416.m05597 crooked neck protein, putative / cell c... 28 1.6
At5g46400.1 68418.m05711 expressed protein 28 2.1
At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00... 27 5.0
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,... 27 5.0
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr... 26 8.7
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 26 8.7
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 26 8.7
At4g17785.1 68417.m02654 myb family transcription factor (MYB39)... 26 8.7
At4g01940.1 68417.m00259 nitrogen fixation NifU-like family prot... 26 8.7
At3g29810.1 68416.m03794 phytochelatin synthetase family protein... 26 8.7
At2g07240.1 68415.m00831 Ulp1 protease family protein contains P... 26 8.7
At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38... 26 8.7
>At1g17760.1 68414.m02198 suppressor of forked protein family
protein / SUF family protein Contains Pfam PF05843:
Suppressor of forked protein (Suf); identical to
cleavage stimulation factor 77 (GI:21591637)
[Arabidopsis thaliana]; similar to suppressor of forked
protein; Su(f) protein [Drosophila virilis] GI:4092534
Length = 734
Score = 70.1 bits (164), Expect = 4e-13
Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETK 182
+YE+L++ +PT+ R+WK Y+E +M N + +++F RCL+ L + LW+ Y+ ++++
Sbjct: 28 IYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIRFIRKVY 87
Query: 183 CMLPTY-KEKMAQAYDFALDKIGLD 254
+E+ +A++F L+ IG D
Sbjct: 88 DKKGAEGQEETTKAFEFMLNYIGTD 112
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 266 PIWNDYVTFLKSVEAVGSYAENQKISAVQKI 358
PIW +Y+ FLKS+ A+ + + +A++K+
Sbjct: 117 PIWTEYIAFLKSLPALNLNEDLHRKTALRKV 147
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +3
Query: 6 YEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKC 185
YE+ + W Y E +K+ + + K+FQR L I + E+ + ++E++
Sbjct: 255 YEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAIPDSEMLKYAFAEMEESRG 314
Query: 186 MLPTYKE 206
+ + K+
Sbjct: 315 AIQSAKK 321
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 35.1 bits (77), Expect = 0.014
Identities = 12/60 (20%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKI-LNIELWRLYLNYVKET 179
+Y+ + FP YWK + + E + ++V ++++R ++ + ++++W Y + T
Sbjct: 124 VYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYERAVLGVTYSVDIWLHYCTFAINT 183
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNI-ELWRLYL 161
W Y++ + +F +V KL++RC++ N E W Y+
Sbjct: 364 WHNYLDFIERDGDFNKVVKLYERCVVTCANYPEYWIRYV 402
>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 657
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL-MKILNIELWRLYLNY 167
+ +K YIE E++ RN +R KL++R L N WR Y +
Sbjct: 414 KIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEF 456
Score = 29.5 bits (63), Expect = 0.70
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E+ ER L++R L + + ++W
Sbjct: 486 WKTYIDFEISEGELERTRALYERLLDRTKHCKVW 519
>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 673
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL-MKILNIELWRLYLNY 167
+ +K YIE E+K N +R KL++R L N WR Y +
Sbjct: 444 KIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEF 486
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E+ FE+ L++R L + + ++W
Sbjct: 516 WKTYIDFEISEGEFEKTRALYERLLDRTKHCKVW 549
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 30.3 bits (65), Expect = 0.40
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCL 122
++E ++ +P W +Y++QE++ + + LF+R +
Sbjct: 1754 LFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAI 1793
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 29.5 bits (63), Expect = 0.70
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 48 WKIYIEQEMKARNFERVEKLFQRCLMKILNIELW 149
WK YI+ E+ ER L++R L + + ++W
Sbjct: 529 WKAYIDFEISEGELERTRALYERLLDRTKHYKVW 562
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 42 RYWKIYIEQEMKARNFERVEKLFQRCL 122
+ +K YIE E++ N +R KL++R L
Sbjct: 457 KIFKKYIEIELQLGNMDRCRKLYERYL 483
>At3g51110.1 68416.m05597 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 413
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/55 (18%), Positives = 26/55 (47%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNY 167
++++ + P ++W YI E N + K+F+R + + + W ++ +
Sbjct: 128 VWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFIKF 182
>At5g46400.1 68418.m05711 expressed protein
Length = 1036
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLM-KILNIELWRLY 158
+Y+ + FP YW+ Y ++K E ++F+R + ++ +W Y
Sbjct: 70 VYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVWLDY 122
>At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 579
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 359 RSFERRISSGSRRMNQRLRHSSETSRSRSILGKRGVQTYLVQGEVVGL 216
+SF R SG + + R S S SRS +Q +L G+ +GL
Sbjct: 321 KSFSRYFRSGIKHILGRSSSSKNMSSSRSETRPLNLQKFLNFGDSIGL 368
>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 504
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 150 RLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGL 251
++YL + K L +++ +++AYDF++ +IGL
Sbjct: 461 KIYLER-QNVKLDLKRFRKPLSRAYDFSMKRIGL 493
>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
pyrophosphatase family protein similar to SP|P22413
Ectonucleotide pyrophosphatase/phosphodiesterase 1
(Plasma-cell membrane glycoprotein PC-1) [Includes:
Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
Pfam profile PF01663: Type I phosphodiesterase /
nucleotide pyrophosphatase
Length = 461
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 302 HSSETSRSRSILGKRGVQTYLVQGEVVGLR 213
H S SR + + VQ Y V E++GLR
Sbjct: 407 HGSRFSRGKKVPSFENVQIYNVVAELLGLR 436
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 9 EKLITAFPTTGRYWKIYIEQEMK---ARNFERVEKLFQRCLMKILNIELWRLYLNYVKE 176
E + FP + W + E + N + L++R L ++ LW YL+++ E
Sbjct: 90 EAMSAIFPLSPSLWLEWARDEASLAASENVPEIVMLYERGLSDYQSVSLWCDYLSFMLE 148
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 9 EKLITAFPTTGRYWKIYIEQEMK---ARNFERVEKLFQRCLMKILNIELWRLYLNYVKE 176
E + FP + W + E + N + L++R L ++ LW YL+++ E
Sbjct: 90 EAMSAIFPLSPSLWLEWARDEASLAASENVPEIVMLYERGLSDYQSVSLWCDYLSFMLE 148
>At4g17785.1 68417.m02654 myb family transcription factor (MYB39)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 360
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 262 LPNMERLRDVSEECRSRWFIRREPEDIRRSK 354
LP + L + CR RW P DIRR K
Sbjct: 41 LPKLAGLNRCGKSCRLRWMNYLRP-DIRRGK 70
>At4g01940.1 68417.m00259 nitrogen fixation NifU-like family protein
similar to apricot NifU homolog partial CDS, GenBank
accession number U95179; contains Pfam profile: PF01106
NifU-like domain
Length = 231
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 80 EKF*KSRKALPEVSDEDIKHRTLEAV 157
EKF + K + +V DE++K T+EAV
Sbjct: 146 EKFGDALKDIRQVFDEEVKQITVEAV 171
>At3g29810.1 68416.m03794 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL2 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 441
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 178 VSFT*FRYSLQSSMFNIFIRHLWKSFSTLSKFLAF 74
V+ T F Y++ S +N+ ++H +F L+K +F
Sbjct: 304 VAITNFNYNMNYSQWNLVVQH--PNFDNLTKLFSF 336
>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 928
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 146 LEAVPELREG---DEVHATHLQGENGAGLRLRPG 238
LEAVP ++EG DEV + E A + RPG
Sbjct: 147 LEAVPAIQEGPQIDEVVLSDSDAEAAADVATRPG 180
>At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 148
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 102 KLFQRCLMKILNIELWRLYLNYVKETKCML 191
K+ C+++I N+ W+ LN +K+T +L
Sbjct: 33 KVNSPCIVEIKNMNQWKSRLNALKDTNKLL 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,323,227
Number of Sequences: 28952
Number of extensions: 169707
Number of successful extensions: 557
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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