Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20607
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.0  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   4.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   7.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.9  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 526 SSCHGYHSCVIVETLVFFKNVCMMYE-MHE 612
           SS   +H CVI+     F  VC+ Y+  HE
Sbjct: 288 SSHQWFHVCVIIAAFCHFHGVCIAYDYFHE 317


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -3

Query: 335  PKL*LHLKLVNQANAVQNTNISYETNTTFII*RNSIREDKKIPLISNVLHLNTNTNSYKH 156
            PK     K +N+ NA ++ N+++  +      R  IRE  K+P  S   HL+   NS  H
Sbjct: 892  PKAISASKAINR-NAQKSQNLNFLKSKQETTQR--IRESAKVPRTSAGNHLSEKLNSDNH 948

Query: 155  LICELNKL 132
            +   L KL
Sbjct: 949  IPKALQKL 956


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 562 PRLHKSGTHDNYSNKYNDN 506
           PRL K  TH+N SN  ND+
Sbjct: 465 PRLKKEETHENGSNLTNDS 483


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 339 EKLQLYSKNTELSKH*ENYIL----LICSKNLNGQYSSFPEYL 455
           EK QL+ K  +L +  ENY L    LI +KN+ G   +   YL
Sbjct: 253 EKYQLFMKGIQLKQLEENYSLIEQSLINTKNVLGNKKTGVSYL 295


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 535 DNYSNKYNDN 506
           DNYSN YNDN
Sbjct: 825 DNYSNHYNDN 834


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 535 DNYSNKYNDN 506
           DNYSN YNDN
Sbjct: 825 DNYSNHYNDN 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,112
Number of Sequences: 5004
Number of extensions: 62937
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)