Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20607
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    28   8.4  

>SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 556 LHKSGTHDNYSNKYNDNPKCGTAFL*FNFVPLNLRYSGNELYWPFKFLLQIN 401
           LH   THDNY    +   +     L  NF  +N RY  N  +W     LQ+N
Sbjct: 185 LHAVTTHDNYRELVSAAHQLEDILLSCNFNGVNCRYRCN--WWTRGLTLQLN 234


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 423 LNFC--CRSIKYNFLNV*IILCFWNIIVIFRTQIIIAF 316
           L FC  C SI    + + II+   N+IVIF   III F
Sbjct: 176 LGFCYRCLSIIIIIVTIIIIIIIVNVIVIFTIIIIIIF 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,944,436
Number of Sequences: 59808
Number of extensions: 399741
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)