SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20606
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   174   1e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...   101   9e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   101   1e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    94   1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    71   2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    63   3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    54   1e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    43   3e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    32   0.085
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.34 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.45 
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    27   2.4  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   4.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   4.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   4.2  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   5.6  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   5.6  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   5.6  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   5.6  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  174 bits (423), Expect = 1e-44
 Identities = 78/88 (88%), Positives = 82/88 (93%)
 Frame = +2

Query: 245 QKRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 424
           ++  LTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120

Query: 425 QIMFETFNTPAMYVAIQAVLSLYASGRT 508
           QI+FETFN PA YVAIQAVLSLYASGRT
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRT 148



 Score =  129 bits (311), Expect = 4e-31
 Identities = 57/62 (91%), Positives = 61/62 (98%)
 Frame = +3

Query: 69  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 248
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 249 RG 254
           RG
Sbjct: 62  RG 63



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +3

Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
           IY+GYALPHAI+RLDLAGRDLT YLMKIL +RGY+
Sbjct: 165 IYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYT 199



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 511 GIVLDSGDGVSQTVP 555
           GIVLDSGDGV+ TVP
Sbjct: 150 GIVLDSGDGVTHTVP 164


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score =  101 bits (242), Expect = 9e-23
 Identities = 47/96 (48%), Positives = 61/96 (63%)
 Frame = +2

Query: 260 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 439
           +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148

Query: 440 TFNTPAMYVAIQAVLSLYASGRTPVSCWTPATVSPR 547
           +FN   +Y+A+QAVL+L AS       WT + V+ R
Sbjct: 149 SFNCAGLYIAVQAVLALAAS-------WTSSKVTDR 177



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +3

Query: 87  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 236
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+  +
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDR 650
           + +GY +  +I  + LAGRD+T ++  +L DR
Sbjct: 196 VAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 499 RSYPGIVLDSGDGVSQTVP 555
           RS  G V+DSGDGV+  +P
Sbjct: 177 RSLTGTVVDSGDGVTHIIP 195


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  101 bits (241), Expect = 1e-22
 Identities = 42/85 (49%), Positives = 63/85 (74%)
 Frame = +2

Query: 248 KRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 427
           +  L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE P+NP ANREKM +
Sbjct: 62  RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121

Query: 428 IMFETFNTPAMYVAIQAVLSLYASG 502
            MFE +    +YVAIQAVLSLYA G
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQG 146



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +3

Query: 75  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 248
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VGDEA++ 
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61

Query: 249 R 251
           R
Sbjct: 62  R 62



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
           +Y+   L H + RLD+AGRD T YL+ +L  +GY+
Sbjct: 165 VYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYA 199



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 511 GIVLDSGDGVSQTVP 555
           G+V+DSGDGV+  VP
Sbjct: 150 GVVVDSGDGVTHIVP 164


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 LTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIM 433
           L ++ PIE GI+ NW DME+IW + + ++ L   PEEHP+LLTE PL    N+EK+ +  
Sbjct: 69  LKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYF 128

Query: 434 FETFNTPAMYVAIQAVLSLYASGRT 508
           +ET N PA+  ++Q VL+LYAS RT
Sbjct: 129 YETLNVPALSFSLQPVLALYASART 153



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 32/56 (57%), Positives = 41/56 (73%)
 Frame = +3

Query: 87  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 254
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +VG EAQ+ RG
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYSV 662
           IYDG+++P AI + ++ GRD+T YL   L   G+ +
Sbjct: 170 IYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHEL 205



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 472 PSRALAVRVRSYPGIVLDSGDGVSQTVP 555
           P  AL    R+  GIVL+ GDG++ +VP
Sbjct: 143 PVLALYASART-TGIVLECGDGLTHSVP 169


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 37/108 (34%), Positives = 53/108 (49%)
 Frame = +2

Query: 182 PSGCDGRHGTERLVRRRRGTEQKRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 361
           PS C       RL       +    + +K  I +G V NWD    +W +    +L+  P 
Sbjct: 38  PSYCGEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPL 97

Query: 362 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 505
           EHP+L+TE   NP  NR K  + MFE+   PA Y+A Q   + +ASG+
Sbjct: 98  EHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGK 145



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 72  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 173
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%)
 Frame = +2

Query: 272 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 451
           P E  +++NWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT+++FE +N 
Sbjct: 86  PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144

Query: 452 PAMYVAIQAVLSLY 493
           P++   I  + S Y
Sbjct: 145 PSVAYGIDGLFSFY 158



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 87  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 182
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 22/76 (28%), Positives = 44/76 (57%)
 Frame = +2

Query: 281 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 460
           +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  + PA 
Sbjct: 74  NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133

Query: 461 YVAIQAVLSLYASGRT 508
           Y+  QAV   +A+ ++
Sbjct: 134 YLTKQAVCVAFANSKS 149



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +3

Query: 72  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
           EE+ +LV+D GS   + G+AG+++P  + PS      + GV   +  ++ YV DE Q
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +2

Query: 272 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 439
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171

Query: 440 TFNTPAMYVAIQAVLSLYASG 502
               P   +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = +2

Query: 332  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 475
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I  ++ NTP +    VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 132 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 254
           G+  PRA F  ++  P H G+++ M  KD   G+E  S +G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -3

Query: 229 PTYESFCPM-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 68
           PT  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 582 AILRLDLAGRDLTGYLMKILTDRGYSV 662
           A+ R+D+ G+ LT YL ++++ R Y++
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYNM 208


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 374 LLTEAPLNPKANREKMTQIMFETFN 448
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 653 AAVGEDLHEVACEVATGQVQTQDGVRECVSVVD 555
           AA G+   + +C++A+G    Q+G  + +S+V+
Sbjct: 402 AAAGKFFSQHSCDLASGNKSAQEGQNQFLSMVE 434


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 232 SPTYESFC--PMPTITP*WRGLPTIEGNTARGASSPAKPAL 116
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
 Frame = -1

Query: 597 PDAGWREGVRIRRRWYG------LGDTVAGVQHDTG---VRPDAYSESTAWMATYMAGVL 445
           PD  W E  RI   W G        D    V    G    R D  +E  +W+  ++ GV 
Sbjct: 283 PDTEWHEPTRISYEWDGKDAETYTEDIHLSVDAPLGRRLQRIDVLAEIPSWLKGFVHGVS 342

Query: 444 NVSNMIWVIFSLLALGLR 391
                I+  FS +   L+
Sbjct: 343 GTKPFIYQYFSPVKFTLK 360


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 126 NRPCTYRSHCLLPTRQLP 73
           NRP  YRSH  + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 273 GYLRVRNLFCSVPRL 229
           GY  +RN+ CSVPRL
Sbjct: 675 GYCIIRNVGCSVPRL 689


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 635 LHEVACEVATGQVQTQDGVRECVSVVDGTVWETPSPESSTI 513
           L E+  +V      T DGV + + + DG  WE+ S   S +
Sbjct: 274 LQELFDDVLRANGDTNDGVYDWMLLNDGKGWESSSSHFSVV 314


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 550 VPSTTDTHSLTPSCVW 597
           VP  TDT++LTP   W
Sbjct: 30  VPENTDTYALTPLFYW 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,531
Number of Sequences: 5004
Number of extensions: 64172
Number of successful extensions: 216
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -