Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20606
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_56| Best HMM Match : Actin (HMM E-Value=0) 183 1e-46
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 183 1e-46
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 6e-31
SB_54| Best HMM Match : Actin (HMM E-Value=0) 100 9e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 83 3e-16
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 72 5e-13
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 70 2e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 55 4e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 32 0.48
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.63
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.5
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 29 2.6
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 29 3.4
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 29 3.4
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 29 4.5
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 29 4.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 7.8
SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14) 28 7.8
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 28 7.8
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 183 bits (446), Expect = 1e-46
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = +2
Query: 245 QKRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 424
++ LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 425 QIMFETFNTPAMYVAIQAVLSLYASGRT 508
QIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 132 bits (320), Expect = 2e-31
Identities = 61/64 (95%), Positives = 63/64 (98%)
Frame = +3
Query: 63 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRG 254
SKRG
Sbjct: 61 SKRG 64
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
IY+GYALPHAI+RLDLAGRDLT YLMKILT+RGYS
Sbjct: 166 IYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS 200
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
GIV+DSGDGV+ TVP
Sbjct: 151 GIVMDSGDGVTHTVP 165
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 183 bits (446), Expect = 1e-46
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = +2
Query: 245 QKRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 424
++ LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 425 QIMFETFNTPAMYVAIQAVLSLYASGRT 508
QIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRT 148
Score = 130 bits (313), Expect = 1e-30
Identities = 59/62 (95%), Positives = 62/62 (100%)
Frame = +3
Query: 69 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 248
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 249 RG 254
RG
Sbjct: 62 RG 63
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
IY+GYALPHAILRLDLAGRDLT YLMKILT+RGYS
Sbjct: 165 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 199
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
GIV+DSGDGV+ TVP
Sbjct: 150 GIVMDSGDGVTHTVP 164
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 183 bits (446), Expect = 1e-46
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = +2
Query: 245 QKRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 424
++ LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 425 QIMFETFNTPAMYVAIQAVLSLYASGRT 508
QIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRT 148
Score = 131 bits (316), Expect = 6e-31
Identities = 60/62 (96%), Positives = 62/62 (100%)
Frame = +3
Query: 69 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 248
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 249 RG 254
RG
Sbjct: 62 RG 63
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
IY+GYALPHAILRLDLAGRDLT YLMKILT+RGYS
Sbjct: 165 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 199
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
GIV+DSGDGV+ TVP
Sbjct: 150 GIVMDSGDGVTHTVP 164
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 183 bits (446), Expect = 1e-46
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = +2
Query: 245 QKRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 424
++ LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 425 QIMFETFNTPAMYVAIQAVLSLYASGRT 508
QIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 137 bits (331), Expect = 9e-33
Identities = 62/64 (96%), Positives = 64/64 (100%)
Frame = +3
Query: 63 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRG 254
SKRG
Sbjct: 61 SKRG 64
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
IY+GYALPHAILRLDLAGRDLT YLMKILT+RGYS
Sbjct: 166 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 200
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
GIV+DSGDGV+ TVP
Sbjct: 151 GIVMDSGDGVTHTVP 165
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 183 bits (446), Expect = 1e-46
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = +2
Query: 245 QKRFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 424
++ LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 425 QIMFETFNTPAMYVAIQAVLSLYASGRT 508
QIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 132 bits (320), Expect = 2e-31
Identities = 59/64 (92%), Positives = 63/64 (98%)
Frame = +3
Query: 63 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRG 254
SKRG
Sbjct: 61 SKRG 64
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
GIV+DSGDGVS TVP
Sbjct: 151 GIVMDSGDGVSHTVP 165
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 131 bits (316), Expect = 6e-31
Identities = 59/62 (95%), Positives = 62/62 (100%)
Frame = +3
Query: 69 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 248
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 249 RG 254
RG
Sbjct: 62 RG 63
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
IY+GYALPHAI+RLDLAGRDLT YLMKILT+RGYS
Sbjct: 128 IYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS 162
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +2
Query: 407 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 508
N + M +IMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRT 111
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2
Query: 245 QKRFLTLKYPIEHGIVTNWDDMEKIWHHTF 334
++ LTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
GIV+DSGDGV+ TVP
Sbjct: 113 GIVMDSGDGVTHTVP 127
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 100 bits (240), Expect = 9e-22
Identities = 45/65 (69%), Positives = 55/65 (84%)
Frame = +2
Query: 314 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 493
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 494 ASGRT 508
ASGRT
Sbjct: 2189 ASGRT 2193
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 87 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 188
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 58.8 bits (136), Expect = 4e-09
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
+YDGY LPHA R+DLAGRDLT YL +++T+RGYS
Sbjct: 2210 VYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYS 2244
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 100 bits (239), Expect = 1e-21
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Frame = +2
Query: 239 TEQKRFLTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 415
++ + L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NRE
Sbjct: 62 SQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNRE 121
Query: 416 KMTQIMFETFNTPAMYVAIQAVLSLYASG 502
KM ++MFE + +Y+AIQAVL+LYA G
Sbjct: 122 KMIEVMFENYQFEGVYIAIQAVLTLYAQG 150
Score = 51.6 bits (118), Expect = 6e-07
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
+Y+G+ALPH RLD+AGRD+T YL+K++ RGY+
Sbjct: 169 VYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYA 203
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 81 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKR 251
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLR 65
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/49 (69%), Positives = 44/49 (89%)
Frame = +2
Query: 362 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 508
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRT
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT 174
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGY 656
IY+G+A+PH+I+R D+AGRD++ YL +L G+
Sbjct: 191 IYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGH 224
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
G+VLD+GDGVS +VP
Sbjct: 176 GVVLDAGDGVSHSVP 190
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 71.7 bits (168), Expect = 5e-13
Identities = 29/79 (36%), Positives = 52/79 (65%)
Frame = +2
Query: 272 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 451
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 452 PAMYVAIQAVLSLYASGRT 508
PA ++ +VL+ +A+GR+
Sbjct: 63 PAFFLCKNSVLTAFANGRS 81
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/35 (85%), Positives = 34/35 (97%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDRGYS 659
IY+GYALPHAILRLDLAGRDLT YLMK++T+RGYS
Sbjct: 44 IYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYS 78
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2
Query: 428 IMFETFNTPAMYVAIQAVLSLYASGRT 508
IMFE FN+PA+YVAIQAVLSLYASGRT
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT 27
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 511 GIVLDSGDGVSQTVP 555
G+V DSGDGVS VP
Sbjct: 29 GVVFDSGDGVSHNVP 43
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 72 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 188
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +3
Query: 51 Y*FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-S 221
Y FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 691 YSFKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYK 750
Query: 222 YVGDEAQSKRG 254
GD A +K G
Sbjct: 751 KYGDAAVAKSG 761
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 266 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 379
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -2
Query: 185 MAGPSDDRGEYGARSIISCETGLAHTGAIVYYQRGNFLV 69
MA +DD GE G+ SI+S ETGLAHTGAI+ Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 537 CLPDRTIYDGYALPHAILRLDLAGRDLTGYLMK 635
C+ D T+ G LPH + +L+L + LTGYL K
Sbjct: 1678 CVGDETL--GQLLPHLLEQLELCQKSLTGYLEK 1708
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 263 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 415
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 160 GNTARGASSPAKPALHIPEPLSTT 89
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 537 CLPDRTIYDGYALPHAILRLDLAGRDLTGYLMK 635
C+ D T+ G LPH + +L+L + LTGYL K
Sbjct: 1658 CVGDETM--GQLLPHLLEQLELCQKSLTGYLEK 1688
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 160 GNTARGASSPAKPALHIPEPLSTT 89
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 160 GNTARGASSPAKPALHIPEPLSTT 89
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 242 EQKRFLTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 343
E K + L Y P + G + NWD ++IW +TF E
Sbjct: 280 ECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 75 EVAALVVDNGSGMCKAGFAGDDAPRAV 155
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 280 FDGVFEGQEPLLLCASSPTYESFCPMPTITP*WRGLPT 167
+DGV + + LLL +SSP + S P+ TP +GL T
Sbjct: 273 YDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 432 CSKHSTRPPCTSPSKPCSRCTRPVVPRYRAG 524
C H+ R P T+PS PC Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 555 IYDGYALPHAILRLDLAGRDLTGYLMKILTDR 650
+ +GY + I + +AGRD+T ++ ++L +R
Sbjct: 78 VAEGYVIGSCIKHIPIAGRDITFFVQQLLRER 109
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 464 VAIQAVLSLYASGRTPVSCWTPATVSPRPYHLRRIRTPSRHPASGLGRS 610
VA AV+ + +T W+P +V+ + R RT S SGLGR+
Sbjct: 1119 VATLAVVLADSPAKTMTKAWSPCSVTCGNDNETRTRTCSNPHPSGLGRN 1167
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 537 CLPDRTIYDGYALPHAILRLDLAGRDLTGYLMK 635
C+ D T+ G LPH + +L++ + L+GYL K
Sbjct: 622 CVGDDTL--GQLLPHLLEQLEICQKSLSGYLEK 652
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 160 GNTARGASSPAKPALHIPEPLSTT 89
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 160 GNTARGASSPAKPALHIPEPLSTT 89
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 238 ASSPTYESFCPMPTITP*WRGLPTI 164
A+SP Y S P+PT TP PTI
Sbjct: 1222 ATSPPYTSASPVPTTTPSASSSPTI 1246
>SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14)
Length = 713
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 521 WTPATVSPRPYHLRRIRTPSRHPASGLGRSR 613
W P T++ + L + P +H A+ LGR R
Sbjct: 575 WLPITMAQKVDSLYSVIAPGKHVATNLGRDR 605
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/90 (25%), Positives = 36/90 (40%)
Frame = +2
Query: 389 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTPVSCWTPATVSPRPYHLRRI 568
PLN ++ + +MF T P M+ Q L S + V + ++ H+R +
Sbjct: 249 PLNLQSCPPPLNSVMFATSQPPVMFATSQPPLMSATSQLSHVRHLSTSS------HVRHL 302
Query: 569 RTPSRHPASGLGRSRPHRLPHEDPHRPRLL 658
T S P L P + P P+LL
Sbjct: 303 STQSCSPPLNLQSCPPFLMIQSCPSFPKLL 332
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,646,135
Number of Sequences: 59808
Number of extensions: 577174
Number of successful extensions: 2317
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2307
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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