Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20605
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   145   5e-36
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.64 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.5  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    28   1.5  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.9  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  145 bits (352), Expect = 5e-36
 Identities = 66/106 (62%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
 Frame = +1

Query: 205 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 384
           K +   E  L     + ++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 385 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI-ESHT 519
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  + + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score =  109 bits (262), Expect = 4e-25
 Identities = 46/62 (74%), Positives = 55/62 (88%)
 Frame = +3

Query: 513 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 692
           PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TLGNF
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209

Query: 693 AK 698
            K
Sbjct: 210 VK 211



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 25/37 (67%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 616 RSFFRWLVYRTATPQLVVQL 675
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 143 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 18
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 503 RSKATHRPLQGHRQVWFCNSPADSCPSWYWN 595
           +S+A    L G  +   C   + SCPS++WN
Sbjct: 151 QSRADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 471 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 337
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,875
Number of Sequences: 5004
Number of extensions: 60666
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)