Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20605
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 1e-39
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 159 2e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 158 3e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 158 3e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 158 3e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 158 3e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At3g01450.1 68416.m00069 expressed protein 29 2.2
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.0
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.2
At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s... 28 5.2
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s... 28 5.2
At1g72390.1 68414.m08373 expressed protein 28 5.2
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.8
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 9.0
At3g27180.1 68416.m03399 expressed protein 27 9.0
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 27 9.0
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (387), Expect = 1e-39
Identities = 72/91 (79%), Positives = 84/91 (92%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI-ESHT 519
TAIRGAIILAKLSV+P+RRGYWGNKI + HT
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 113 bits (271), Expect = 1e-25
Identities = 49/63 (77%), Positives = 57/63 (90%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 689
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 690 FAK 698
F K
Sbjct: 221 FVK 223
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/35 (68%), Positives = 32/35 (91%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 159 bits (386), Expect = 2e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGNKI + HT
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 113 bits (271), Expect = 1e-25
Identities = 49/63 (77%), Positives = 57/63 (90%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 689
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 690 FAK 698
F K
Sbjct: 230 FVK 232
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++WVPVTKLGRLV G I ++E IYL SLP+K+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGNKI + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 113 bits (271), Expect = 1e-25
Identities = 49/63 (77%), Positives = 57/63 (90%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 689
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 690 FAK 698
F K
Sbjct: 229 FVK 231
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGNKI + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 113 bits (271), Expect = 1e-25
Identities = 49/63 (77%), Positives = 57/63 (90%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 689
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 690 FAK 698
F K
Sbjct: 229 FVK 231
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGNKI + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 113 bits (271), Expect = 1e-25
Identities = 49/63 (77%), Positives = 57/63 (90%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 689
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 690 FAK 698
F K
Sbjct: 229 FVK 231
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGNKI + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 113 bits (271), Expect = 1e-25
Identities = 49/63 (77%), Positives = 57/63 (90%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 689
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 690 FAK 698
F K
Sbjct: 229 FVK 231
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 295 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 474
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 475 PV 480
V
Sbjct: 209 QV 210
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 689
K T P + G G+ V L PA GTG+++ + +L+MAGV++ GS L N
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 512 LSILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 333
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 332 VCF 324
CF
Sbjct: 222 TCF 224
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -1
Query: 512 LSILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 333
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 332 VCFCTGMIFRTSSFR 288
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 361 AFVAIGDNNGHIGLGVKCSKE 423
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-2) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
Length = 280
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 497 VTRSKATHRPLQGHRQVWFCNSPADSCPSWYWN 595
+ +SK L G + C + SCPS++WN
Sbjct: 177 ILQSKKDRAKLDGMYECILCACCSTSCPSYWWN 209
>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-1) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
Length = 279
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 497 VTRSKATHRPLQGHRQVWFCNSPADSCPSWYWN 595
+ +SK L G + C + SCPS++WN
Sbjct: 178 ILQSKKDRAKLDGMYECILCACCSTSCPSYWWN 210
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 675 QLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQNHT 544
QL H+ + P+ QPS++ A Q Q Q HE + A Q T
Sbjct: 938 QLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQQAT 982
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 516 HTVPCKVTGKCGSVTVRL 569
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 341 PARVCFCTGMIFRTSSFRDGPRKKSMISNL*LVKKTSK 228
P R FC+G+ +S + PR+KS +S+ KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g27180.1 68416.m03399 expressed protein
Length = 518
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Frame = +2
Query: 428 PLPFEALLSLLSCLFY--QFEEVTGVTRSKATHRPL------QGHRQVWFCNSPADSCPS 583
PLP L+C F+ +G T+ HRP ++ + DSC
Sbjct: 34 PLPPSTSSDSLACSLQCPHFQSCSGCTQEFNLHRPAVVDEASDFFKRYGVDDFTFDSCRL 93
Query: 584 WYWNCVCASS*EASSDGWCTGL 649
W W C + SSD GL
Sbjct: 94 WGWRCRAKLAVRGSSDNALIGL 115
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 516 HTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 671
HT+ + + L PAP TG+ + V K +L +AG ++ + GS
Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGS 478
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,443
Number of Sequences: 28952
Number of extensions: 345580
Number of successful extensions: 992
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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