Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20604
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.79 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   7.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.7  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 108 KGEPDFDNYVLLKDLLHKIFEGIDELATEIRKDDTLL 218
           KG  D  NYVL   LL ++ E  +  A EI+K   LL
Sbjct: 214 KGSEDKKNYVL---LLKELREAFEAEAQEIKKPALLL 247


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 63  ISMFINEHTKNLDKTKGE 116
           +  ++NEH KN   TKGE
Sbjct: 99  LKAWLNEHKKNPYPTKGE 116


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 39  QKDGPNTFISMFINEHTKNLDKTKG 113
           Q D  N  +   +NE++KN D  +G
Sbjct: 93  QVDDQNESLEASVNENSKNGDDDEG 117


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
          protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 67 DMNVLGPSFCWKFSNLVNIC 8
          D N +   F WK+S++ ++C
Sbjct: 26 DRNSIVHLFEWKWSDIADVC 45


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 592 IYDNLVSTCFQPTLMKELLVLQSITDPTP 678
           I DN+      P +  E+ +   +TD  P
Sbjct: 512 ILDNIYDQLIMPRIQAEVNIWNPLTDTIP 540


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,952
Number of Sequences: 336
Number of extensions: 3349
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)