Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20604
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.0  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   2.6  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   4.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   6.0  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   7.9  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   7.9  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 560 VLYISSVMTKSLYVPGFSTEQTTIVLELLSSQTNV 456
           +L +++VM ++ Y PGF+T+  T V        NV
Sbjct: 10  LLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANV 44


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 126 DNYVLLKDLLHKIFEGIDELATEIRKDDTL 215
           DN VL+KD    IFE +++L  ++ K++TL
Sbjct: 735 DNTVLMKDYSFTIFEKLNDLLDDV-KNETL 763


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 344 IPSFNLSQEQKYSILVDCTDFIHRSYEIPVY 436
           + S +L+  Q+YS+LV   +   R+Y I  Y
Sbjct: 250 VSSIHLTVAQRYSVLVTAKNSTDRNYAITAY 280


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 260 LVASLGVSTCLIPGLGISISKRCSFSNTIPS 352
           + ASL +S  +IP L  +I+ R SF N  P+
Sbjct: 263 IAASLPLSPSIIPPLVSAITDRLSFDNIKPA 293


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 408 IKSVQSTNIEYFCS*LKLKEGIVFENEHLFEIE 310
           + +V++TN++ + S L LKE +   +E L  +E
Sbjct: 279 LNNVETTNLKKYSSFLALKEAVSMTSEQLRVLE 311


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 57  TFISMFINEHTKNLDKTKGEPDFDNYVLLKDLLHKIFEGIDELATEIR 200
           TF  + +N H   LDK  G P + ++  +     K    I+ +   IR
Sbjct: 568 TFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFDKTHPDIESITGIIR 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,326
Number of Sequences: 5004
Number of extensions: 57026
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)