Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20604
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    29   4.7  
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225...    28   8.3  

>02_01_0689 +
           5137506-5137591,5138641-5138709,5139489-5139580,
           5139967-5140289,5141373-5142479,5142593-5143279,
           5144214-5144522,5145488-5145823,5146165-5146263,
           5146676-5146940,5146950-5147104,5147666-5149723,
           5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 6   KHIFTKLENFQQKDGPNTFISMFINEHTKNLDK-TKGEPDFD-NYVLLKDLLHKIFEGID 179
           KH F     FQ  +GP T ++ F + +  ++ +  + E D +  Y LLK+ L++   G D
Sbjct: 400 KHSFDSGSGFQDFNGPYTPLTRFCSSYGPSIPRIVEKENDVEPTYSLLKEWLYQDRIGFD 459

Query: 180 -ELATEI 197
            E   EI
Sbjct: 460 LEFVQEI 466


>01_01_0272 -
           2249662-2249721,2250110-2250335,2250419-2250615,
           2250707-2250955,2251047-2251176,2251473-2251564,
           2251735-2251855,2251940-2252028,2252149-2252271,
           2252379-2252506,2253039-2253147,2253701-2254000
          Length = 607

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 168 EGIDELATEIRKDDTLLISVKQQKVLRTCSSW*HRLVFQHALYLD 302
           E +  +A   R      I++  +KV + C S  H   F+ A+Y+D
Sbjct: 74  EEVSPVAAAARSGRKASITISLKKVCKVCKSTGHEAGFKGAVYID 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,144,367
Number of Sequences: 37544
Number of extensions: 288275
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)