Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20604
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)              28   6.4  
SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   8.4  

>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 72  FINEHTKNLD-KTKGEPDFDNYVLLKDLLHKIFEGIDELATEIRKD 206
           FI E  KN D K       D+Y L  DLL ++ +G+   ++ + K+
Sbjct: 98  FIEELIKNYDGKVHNTRMLDDYTLTDDLLVELIDGVLATSSNVEKE 143


>SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)
          Length = 1002

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 54  NTFISMFINEHTKNLDKTKGEPDFDNYVLLKDLLHKIFEGIDELATEIRKDDTLLISVKQ 233
           +T I +F+ E  + L          +  LL DLL+K+     ++ TE  +DD    S   
Sbjct: 318 DTAIELFLPELERGLFDDNWRIRHSSIQLLGDLLYKVSGVTGKMTTEGDEDDNFGTSHSN 377

Query: 234 QKVL 245
           QK++
Sbjct: 378 QKII 381


>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 1142

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 326 CSFSNTIPSFNLSQEQKYSILVDCTDFIHRSYEIPVYKNIIMTLHLSDYLAALIQLSF 499
           CS S+    F LSQ   + +++ CT +  ++ +IP   N    +  + Y + +I L+F
Sbjct: 702 CSTSDL--DFGLSQVYNFILIIMCTVYAFKTRKIPSNFNEAKLIAFAMYSSCVIWLAF 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,885,888
Number of Sequences: 59808
Number of extensions: 373894
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)