Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20604
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80843-7|AAB37968.1|  150|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U80843-7|AAB37968.1|  150|Caenorhabditis elegans Hypothetical
           protein C32B5.13 protein.
          Length = 150

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 51  PNTFISMFINEHTKNLDKTKGEPDFDNY 134
           P T + +FI EH     + K  P F NY
Sbjct: 80  PETLLKLFIKEHGPGYFRMKAPPSFFNY 107


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 96  LDKTKGEPDFDNYVLLKDLLHKIF--EGIDELATEIRKDDTLLISVKQQK 239
           L + +GEPD+  Y+  K L+ +I+    + +   +  KD   L+++  +K
Sbjct: 44  LVQVEGEPDYKIYIYTKPLIGQIYPLNELKKREVKCEKDKVFLVNLASEK 93


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
            protein ZK1251.9 protein.
          Length = 1701

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 108  KGEPDFDNYVLLKDLLHKIFEGI--DELATEIRKDDT 212
            +G+PDFD    + DL+  + E +  DEL T+   DD+
Sbjct: 1507 EGDPDFDMGAAIDDLVDAVDEEVDEDELGTDGDDDDS 1543


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical protein
            ZK1251.9 protein.
          Length = 1701

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 108  KGEPDFDNYVLLKDLLHKIFEGI--DELATEIRKDDT 212
            +G+PDFD    + DL+  + E +  DEL T+   DD+
Sbjct: 1507 EGDPDFDMGAAIDDLVDAVDEEVDEDELGTDGDDDDS 1543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,855
Number of Sequences: 27780
Number of extensions: 310967
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)