Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20604
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 569 LVNVLYISSVMTKSLYVPGFSTEQTTIVLELLSSQT 462
           +V  + IS +   + Y+P  S E+  + + +L SQT
Sbjct: 243 IVPCVSISYLSVLAFYLPADSGEKIALCINILLSQT 278


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 350 SFNLSQEQKYSILVDC 397
           S  +S+EQ+Y  ++DC
Sbjct: 44  SKQISEEQRYKGMIDC 59


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 350 SFNLSQEQKYSILVDC 397
           S  +S+EQ+Y  ++DC
Sbjct: 44  SKQISEEQRYKGMIDC 59


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 383 ILVDCTDFIHRSYEIPVYKNIIMTLHLSDYLAALIQLSFAPL 508
           ++V CT +   + +IP   N    +  + Y   +I L+F PL
Sbjct: 826 LIVVCTVYAVLTRKIPEAFNESKHIGFTMYTTCVIWLAFVPL 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,580
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)