Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20604
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06440.2 68418.m00722 expressed protein similar to unknown pr...    33   0.18 
At3g58110.1 68416.m06480 expressed protein                             29   2.3  
At3g24255.1 68416.m03045 expressed protein                             29   3.9  
At3g23910.1 68416.m03004 expressed protein                             29   3.9  
At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM ...    28   6.9  
At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containi...    27   9.1  

>At5g06440.2 68418.m00722 expressed protein similar to unknown
           protein (gb|AAF23188.1)
          Length = 479

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 96  LDKTKGEPDFDNYVLLKDLLHKIFEGIDELATEIRKDDTLLISVKQQKVLRT 251
           LDKT   P+  N+  LK LL    E  DE   + R DD   +  K + V  T
Sbjct: 14  LDKTLSSPELTNHETLKSLLRNQLEECDENILDKRTDDVSKLLSKLRSVSMT 65


>At3g58110.1 68416.m06480 expressed protein
          Length = 784

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 526 KDFVMTEEMYKTFTNDRQKYLKIYDNLVSTC 618
           KDFV+TEE  +   ND    ++  D +VSTC
Sbjct: 209 KDFVVTEEERELLENDES--VRFIDEIVSTC 237


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +3

Query: 60  FISMFINEHTKNLDKTKGEPDFDNYVLLKDLLHKIFEGIDELATEIRKDDTLLISVKQQK 239
           FI + +  + + LD   G+  FD+     +L+H++   + +  TEI K +     +    
Sbjct: 623 FIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGD 682

Query: 240 VLRTCSSW*HRLVFQHALYLD 302
           ++    S+  R V  H+  LD
Sbjct: 683 IIEAADSF--RQVRLHSAVLD 701


>At3g23910.1 68416.m03004 expressed protein
          Length = 421

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +3

Query: 60  FISMFINEHTKNLDKTKGEPDFDNYVLLKDLLHKIFEGIDELATEIRKDDTLLISVKQQK 239
           FI + +  + + LD   G+  FD+     +L+H++   + +  TEI K +     +    
Sbjct: 208 FIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGD 267

Query: 240 VLRTCSSW*HRLVFQHALYLD 302
           ++    S+  R V  H+  LD
Sbjct: 268 IIEAADSF--RQVRLHSAVLD 286


>At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM
           TIGR01568 : uncharacterized plant-specific domain
           TIGR01568
          Length = 244

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 559 TFTNDRQKYLKIYDNLVSTCFQPTLMKELLVLQSITDPTP 678
           T T+ ++K  K+YDN V+T     +     V Q +  P P
Sbjct: 135 TITSTKKKKKKVYDNSVTTTTTRLISGGTAVTQHVDSPDP 174


>At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 627

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 506 TEQTTIVLELLSSQTNVRSLLCFYRQVFRMTCE*NLYN-QLILNI 375
           TE    +L LLS    + +   FY  ++RM  + N+Y   +++N+
Sbjct: 190 TETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINV 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,646
Number of Sequences: 28952
Number of extensions: 264580
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)