Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20602
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 123 2e-29
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 77 2e-15
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 42 1e-04
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 39 8e-04
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 38 0.001
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 38 0.002
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 37 0.003
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 36 0.007
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 36 0.007
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 35 0.010
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 35 0.010
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 35 0.013
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 35 0.013
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 35 0.013
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 34 0.017
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 34 0.023
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 34 0.023
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 33 0.040
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 32 0.092
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 31 0.16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 31 0.21
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.28
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.28
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 30 0.37
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 29 0.49
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 0.49
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.49
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 29 0.65
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 29 0.65
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.86
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 29 0.86
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 1.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.5
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 28 1.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.6
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 3.5
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 26 4.6
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 26 4.6
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 6.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.0
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 6.0
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 6.0
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 6.0
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 8.0
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 8.0
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.0
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 123 bits (297), Expect = 2e-29
Identities = 71/145 (48%), Positives = 82/145 (56%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIG 426
G +L AG GTGKTA+ALAIAQELG KVPFCPMVGSEVYS+EIKKTE LMENFRRAIG
Sbjct: 63 GGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRAIG 122
Query: 427 LRIRXXXXXXXXXXXXXXPVETENPAGAMEKQYLM*S*D*KRPRVPNNLNLIQLYMNRYK 606
LR++ P E ENP G K K + L L +
Sbjct: 123 LRVKETKEVYEGEVTEMVPEEAENPLGGYGKTISHVLLGLKTHKGTKQLKLDPSIYESLQ 182
Query: 607 RRRLKLGMSFTLKLILGAVKRQGRS 681
R ++ G ++ GAVKR GRS
Sbjct: 183 REQVSTGDVIYIEANTGAVKRVGRS 207
Score = 96.7 bits (230), Expect = 3e-21
Identities = 44/65 (67%), Positives = 53/65 (81%)
Frame = +3
Query: 510 YGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSWGSEETG*ECTF 689
YGKT+SHV++GLKT KGTKQLKLDP+IYESLQ+E+V GDVIYIEAN+ + G +
Sbjct: 151 YGKTISHVLLGLKTHKGTKQLKLDPSIYESLQREQVSTGDVIYIEANTGAVKRVGRSDAY 210
Query: 690 ATEFD 704
ATEFD
Sbjct: 211 ATEFD 215
Score = 75.4 bits (177), Expect = 8e-15
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +2
Query: 65 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 244
++I EVK + RI+ HSHIKGLGL E+G + G +GQE AREA GI+ D+I+SKK
Sbjct: 2 VQISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKK 61
Query: 245 MAGQ 256
G+
Sbjct: 62 FGGK 65
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 77.4 bits (182), Expect = 2e-15
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRI 435
A+L+AGPP TGKTAIA+ +AQ LG+ PF + SEVYS E+ KTE L++ R++IG+RI
Sbjct: 67 AILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQALRKSIGVRI 126
Query: 436 R 438
+
Sbjct: 127 K 127
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/65 (41%), Positives = 45/65 (69%)
Frame = +2
Query: 62 NMKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSK 241
++ + +K +RI AHSHIKG+GL++N P + + G+VGQ AR AAG+++ MI+
Sbjct: 2 SISVTSHNDVSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEG 61
Query: 242 KMAGQ 256
++AG+
Sbjct: 62 RIAGR 66
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 576 LDPTIYESLQKEKVEVGDVIYIEANSWGSEETG*ECTFATEFD 704
L + +SL KEKV GDVI I+ + + G + A ++D
Sbjct: 168 LGTKMIDSLTKEKVLAGDVISIDKSVGRVTKLGRSFSRARDYD 210
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 420
R+ +LL GPPGTGKT +A A+A EL + F + G E+ + + ++E + N F +A
Sbjct: 688 RSGVLLYGPPGTGKTLLAKAVATEL--SLEFVSIKGPELLNMYVGESEANVRNVFEKA 743
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A A+A E VPF M GS+
Sbjct: 303 VLLTGPPGTGKTMLARAVAGE--ANVPFFFMSGSQ 335
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENF 411
+LL GPPGTGKT +A A+A LG V F +V S + I + ++ E F
Sbjct: 169 VLLYGPPGTGKTLLARAVAASLG--VNFLKVVSSAIVDKYIGESARIIREMF 218
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+L+GPPGTGKT +A A A E VPF + GSE
Sbjct: 333 ILSGPPGTGKTLLAKATAGE--ANVPFLSVSGSE 364
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 372
+LL GPPG GKT +A A+A ELG VPF + + S
Sbjct: 211 VLLHGPPGCGKTMLANALANELG--VPFISISAPSIVS 246
Score = 34.7 bits (76), Expect = 0.013
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 420
+LL GPPG GKT +A A+A E +K F + G E+ + + ++E + + F RA
Sbjct: 529 VLLWGPPGCGKTLLAKAVANE--SKANFISIRGPELLNKYVGESERAVRQVFLRA 581
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
+L+ GPPGTGKT +A A+A E G F + G E+ S ++E N R+A
Sbjct: 261 ILMYGPPGTGKTLMARAVANETGAF--FFLINGPEIMSKMAGESE---SNLRKA 309
Score = 33.9 bits (74), Expect = 0.023
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
+L GPPGTGKT +A AIA E F + G E+ S ++E
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSAN--FISVKGPELLSMWFGESE 576
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 402
+LL GPPGTGKT +A A+A E K F + S + S + +E L+
Sbjct: 415 MLLFGPPGTGKTMLARAVATE--AKATFFSISASSLTSKYLGDSEKLV 460
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++L GPPGTGKT A A+A T F ++GSE+
Sbjct: 216 IMLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL 249
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 253 AALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 402
+ +LL GPPGTGK+ +A A+A E G+ F + S++ S + ++E L+
Sbjct: 163 SGILLYGPPGTGKSYLAKAVATEAGS--TFFSISSSDLVSKWMGESERLV 210
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT + A+A T F +VGSE
Sbjct: 171 VLLYGPPGTGKTMLVKAVAN--STAANFIRVVGSE 203
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 182 ILLYGPPGTGKTLLARAVAHH--TDCKFIRVSGSEL 215
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 34.7 bits (76), Expect = 0.013
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRR 417
+LL GPPGTGKT IA I + L + P + G E+ + + ++E EN R+
Sbjct: 307 ILLYGPPGTGKTLIARQIGKMLNAREPKI-VNGPEILNKYVGQSE---ENVRK 355
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
++LL+GP +GKTA+A IA LG++ PF +V +E
Sbjct: 587 SVLLSGPIASGKTALAATIA--LGSEFPFVKLVSAE 620
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 228 VILYGAPGTGKTLLAKAVANQ--TSATFLRVVGSEL 261
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 211 RDSCRYDKK*ENGRAALLLAGPPGTGKTAIALAIAQEL 324
R+S YD + R LL GPPG+GKT+ A+A EL
Sbjct: 229 RNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGEL 266
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 33.9 bits (74), Expect = 0.023
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 402
+LL GPPGTGKT +A A+A E ++ F + S + S + ++E L+
Sbjct: 495 MLLFGPPGTGKTMLARAVATE--SRSVFFSISASSLTSKFLGESEKLV 540
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.1 bits (72), Expect = 0.040
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
+LL GPPGTGKT + A+A E +V
Sbjct: 316 VLLYGPPGTGKTMVMRAVAAEANAQV 341
Score = 32.7 bits (71), Expect = 0.053
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 420
+LL GPPG KT A AIA E G + F + G E++ + ++E + + F++A
Sbjct: 585 VLLYGPPGCSKTITAKAIATETG--LNFIAVKGPELFDKFVGESERAVRQVFQKA 637
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 31.9 bits (69), Expect = 0.092
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGT---KVPFCPMVGSEVYSTEIKKTE----VLMENFRR 417
+L GPPGTGKT +A +A T K+ F GS+ S + + E +L E RR
Sbjct: 409 VLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARR 468
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE 321
LLL GPPG GKT +A A+A++
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQ 148
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGT---KVPFCPMVGSEVYSTEIKKTE 393
+L GPPGTGKT +A A+A + KV F G++ S + + E
Sbjct: 303 VLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAE 350
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL G PG GKT++ A+A+E G
Sbjct: 1562 ILLEGSPGVGKTSLITALARETG 1584
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
+LLAGP G GK + IA +LG ++
Sbjct: 155 ILLAGPEGIGKKFLITQIAAKLGQQI 180
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
LLL G GTGKT +A LG KV
Sbjct: 470 LLLVGETGTGKTTTIQLLAGLLGQKV 495
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQEL 324
+L GPPGTGKT+ LA A+++
Sbjct: 59 MLFYGPPGTGKTSTILACARKI 80
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL 324
N +L G PGTGKT+ LA+++EL
Sbjct: 50 NNLPHMLFYGSPGTGKTSTILALSREL 76
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.5 bits (63), Expect = 0.49
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 384
+ L GPPG GKT++ +IA L + F VG EIK
Sbjct: 574 MCLVGPPGVGKTSVGKSIASALNREF-FRFSVGGLTDVAEIK 614
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.5 bits (63), Expect = 0.49
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGT 330
L+ GPPGTGKT + ++ L T
Sbjct: 411 LIQGPPGTGKTVTSASVVYHLAT 433
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.5 bits (63), Expect = 0.49
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKV 336
A+LL+GPPG GKT A +A+ G V
Sbjct: 411 AVLLSGPPGIGKTTAAHLVAKLEGYDV 437
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 29.1 bits (62), Expect = 0.65
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG-TKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGL 429
LL+ GP G GK+ +A+ELG + + + + + S + T L E F R + L
Sbjct: 108 LLICGPSGCGKSTAVQVLAKELGYSLIEWLNPMNLKEPSNQESDTLSLTEKFSRFMSL 165
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.65
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQE 321
L+ GPPGTGKT +A A A +
Sbjct: 223 LMFGPPGTGKTLLARACAAQ 242
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
L+ GPPGTGKT + I Q+L
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL 249
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.7 bits (61), Expect = 0.86
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
+LL G PG GKT +A AI+ V F + G E+ I K+E
Sbjct: 643 ILLFGYPGCGKTYLASAISSTF--PVQFISIKGPELLDKYIGKSE 685
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELG 327
++ GP G+GKT +A A++++LG
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG 39
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 265 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTE 378
+ GP G+GKTA+ L + + LG K +V +++++ E
Sbjct: 91 VGGPVGSGKTALLLQLCRLLGEKYSI-GVVTNDIFTRE 127
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 107 ISAHS-HIKGLGLDENGVPIQMAAGLVG 187
+S H+ IK LD+ G+PI++ +GL+G
Sbjct: 35 VSLHNLRIKPEALDKLGIPIEITSGLIG 62
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 253 AALLLAGPPGTGKTAIALAIAQEL 324
A+ L GP G GKTA+ A+A+ L
Sbjct: 533 ASFLFLGPTGVGKTALTKALAEFL 556
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
L+ GPPGTGKT + I L
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 253 AALLLAGPPGTGKTAIALAIA 315
A+ L GP GTGKT + A+A
Sbjct: 615 ASFLFCGPSGTGKTLLTKALA 635
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
+L G PG GKT+IA +A+ +
Sbjct: 206 VLIGEPGVGKTSIAEGLARRI 226
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQ 318
+++ G PGTGKT +A +A+
Sbjct: 11 IIICGTPGTGKTTLAEQVAE 30
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 247 GRAALL-LAGPPGTGKTAIALAIAQELGTK 333
GR +L ++GP G+GK+ +A A+ EL K
Sbjct: 23 GRPFILGISGPQGSGKSTLASALDTELTRK 52
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 489 NRKSCWSYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGD 629
N C+ + S +IIG ++ T + LDP Y+S+QK+ V + D
Sbjct: 154 NVSPCYLQFQGHSIIIIGFCSSLETLVV-LDPDRYQSVQKKFVNIAD 199
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 265 LAGPPGTGKTAIALAIAQEL 324
+AGP G+GKT++A I + L
Sbjct: 26 IAGPSGSGKTSVAQLIVKAL 45
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAI 312
L+ GPPGTGKT L +
Sbjct: 1290 LIQGPPGTGKTKTILGM 1306
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 241 ENGRAALLLAGPPGTGKTA 297
E A L ++G PGTGKTA
Sbjct: 358 EETGACLYISGTPGTGKTA 376
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAI 300
N AL ++G PGTGKT +
Sbjct: 190 NAGGALYVSGAPGTGKTVL 208
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELG 327
L+ GP GTGK+ I AI LG
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLG 58
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 543 LKTAKGTKQLKLDPTIYESLQKEK 614
+KT G KQL P+I++ + E+
Sbjct: 1 MKTVSGVKQLSFTPSIFKKITPEQ 24
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
++ GPPGTGK+ + L + L
Sbjct: 390 IIQGPPGTGKSFVTLKAIETL 410
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 215 IVVDMIRSKKMAGQLYSWQG 274
+++ + KM GQ+YSW G
Sbjct: 87 VIMGLKEDLKMEGQMYSWSG 106
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 271 GPPGTGKTAIALAIAQELGTKV 336
GP GTGKT A++ LG V
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNV 1911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,399
Number of Sequences: 5004
Number of extensions: 56988
Number of successful extensions: 194
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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