Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20602
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 103 9e-23
AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb (recombi... 79 2e-15
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 40 0.002
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 38 0.005
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 38 0.005
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 38 0.007
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 38 0.007
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 37 0.012
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 37 0.012
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 37 0.012
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 37 0.012
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 37 0.016
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 37 0.016
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 37 0.016
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 37 0.016
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 35 0.049
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 35 0.049
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 35 0.049
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 35 0.049
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 35 0.065
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 35 0.065
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 35 0.065
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 35 0.065
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 34 0.11
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 34 0.11
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 33 0.15
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 33 0.15
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 33 0.15
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 33 0.15
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 33 0.15
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 33 0.15
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 33 0.15
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 33 0.20
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 32 0.35
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 32 0.35
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 32 0.46
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 31 0.61
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 31 1.1
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 31 1.1
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 30 1.9
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 30 1.9
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 30 1.9
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 30 1.9
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 29 2.4
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 28 5.7
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 7.5
AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical... 28 7.5
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 27 9.9
AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 27 9.9
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 103 bits (248), Expect = 9e-23
Identities = 61/141 (43%), Positives = 82/141 (58%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRI 435
A+L+AGPP TGKTAIALA++QELG VPF P+V SEV+S E+KKTEVLM +FRRAIGLR+
Sbjct: 84 AVLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFRRAIGLRV 143
Query: 436 RXXXXXXXXXXXXXXPVETENPAGAMEKQYLM*S*D*KRPRVPNNLNLIQLYMNRYKRRR 615
+ PVE + +G M K K + L L + ++R
Sbjct: 144 KETKDVYEGEVTELSPVEASDNSG-MGKTISHLVLSLKTAKGSKQLKLDPSIYDSILKQR 202
Query: 616 LKLGMSFTLKLILGAVKRQGR 678
+++G ++ G VKR GR
Sbjct: 203 VEVGDVIYIEANSGIVKRVGR 223
Score = 87.0 bits (206), Expect = 1e-17
Identities = 40/64 (62%), Positives = 53/64 (82%)
Frame = +3
Query: 513 GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSWGSEETG*ECTFA 692
GKT+SH+++ LKTAKG+KQLKLDP+IY+S+ K++VEVGDVIYIEANS + G +A
Sbjct: 169 GKTISHLVLSLKTAKGSKQLKLDPSIYDSILKQRVEVGDVIYIEANSGIVKRVGRCDVYA 228
Query: 693 TEFD 704
+EFD
Sbjct: 229 SEFD 232
Score = 68.5 bits (160), Expect = 4e-12
Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Frame = +2
Query: 71 IEEVKSTAKT-QRISAHSHIKGLGLD-ENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 244
IEEVK T K +RI+AHSH+KGLG+D E AAG VGQ AR AA IVVDMIR K
Sbjct: 20 IEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVDMIRLKC 79
Query: 245 MAGQ 256
MAG+
Sbjct: 80 MAGR 83
>AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb
(recombination protein) homologprotein 2 protein.
Length = 448
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRI 435
ALL+ G PG GKTAIA+AI++ELG PF +V SE+YS EI KTE L + FRRA+G++I
Sbjct: 68 ALLVTGEPGAGKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALTQAFRRALGIQI 127
Query: 436 R 438
+
Sbjct: 128 K 128
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +2
Query: 80 VKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGQ 256
VK K +R S HSHI GLGL++ ++ G+VGQ +AR+AAG++V MI+ K+AG+
Sbjct: 9 VKDIVKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKIAGR 67
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/35 (60%), Positives = 24/35 (68%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A AIA E +VPF GSE
Sbjct: 237 VLLVGPPGTGKTLLARAIAGE--AQVPFFHTAGSE 269
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN 408
+LL GPPGTGK+ IA A+A E G F + S++ S + ++E L++N
Sbjct: 154 ILLFGPPGTGKSYIAKAVATEAGEST-FFSISSSDLMSKWLGESEKLVKN 202
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 322 LLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 322 LLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQE 321
A++LAGPPGTGKT IA AIA E
Sbjct: 228 AMVLAGPPGTGKTLIARAIASE 249
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQE 321
A++LAGPPGTGKT IA AIA E
Sbjct: 228 AMVLAGPPGTGKTLIARAIASE 249
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
+LL GPPGTGKT IA A+A E G+ F + G EV S ++E N R+A
Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSF--FFLINGPEVMSKMSGESE---SNLRKA 295
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE 321
+L GPPG GKT +A AIA E
Sbjct: 520 VLFYGPPGCGKTLLAKAIANE 540
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQE 321
A++LAGPPGTGKT IA AIA E
Sbjct: 228 AMVLAGPPGTGKTLIARAIASE 249
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
+LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE 321
+L GPPG GKT +A AIA E
Sbjct: 519 VLFYGPPGCGKTLLAKAIANE 539
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
+LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE 321
+L GPPG GKT +A AIA E
Sbjct: 519 VLFYGPPGCGKTLLAKAIANE 539
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 420
+LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 571 ILLCGPPGCGKTLLAKAVANETG--MNFISVKGPELLNMYVGESERAVRTVFQRA 623
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 243 IVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+L GPPGTGKT +A A A E VPF + GSE
Sbjct: 330 ILTGPPGTGKTLLAKATAGE--ANVPFITVSGSE 361
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 420
+LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 571 ILLCGPPGCGKTLLAKAVANETG--MNFFSVKGPELLNMYVGESERAVRTVFQRA 623
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 243 IVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRR 417
R+ ++L G PG GKT IA A+A E K+ F + G E+ + + ++E EN R+
Sbjct: 493 RSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPELLNKYVGQSE---ENLRK 543
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRR 417
R+ ++L G PG GKT IA A+A E K+ F + G E+ + + ++E EN R+
Sbjct: 493 RSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPELLNKYVGQSE---ENLRK 543
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRR 417
R+ ++L G PG GKT IA A+A E K+ F + G E+ + + ++E EN R+
Sbjct: 493 RSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPELLNKYVGQSE---ENLRK 543
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 196 VLLFGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 229
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK 333
L GPPG GKT+IA AIA+ +G K
Sbjct: 332 LCFTGPPGIGKTSIAKAIAESMGRK 356
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 191 VLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 224
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 212 VLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 245
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT A A+A T F ++GSE+
Sbjct: 214 VLLYGPPGTGKTLCARAVANR--TDACFIRVIGSEL 247
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 34.7 bits (76), Expect = 0.065
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQELGTKV 336
N +LL GPPGTGKT++ +AQ L ++
Sbjct: 170 NVNRLILLTGPPGTGKTSLCKGLAQHLSIRM 200
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.065
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 420
LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 180 LLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 231
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 34.7 bits (76), Expect = 0.065
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 420
LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 188 LLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 239
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVL---MENFRRAIGL 429
LL GPPGTGKT LA A+++ + MV E+ +++ + +V+ + NF + GL
Sbjct: 65 LLFYGPPGTGKTTTVLAAARQMYSPTKMASMV-LELNASDERGIDVVRNTIVNFAQTKGL 123
Query: 430 R 432
+
Sbjct: 124 Q 124
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+L+ GPPGTGKT +A A+A + TK F + G ++
Sbjct: 214 VLMYGPPGTGKTMMARAVAAQ--TKSTFLKLAGPQL 247
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 393
N ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 423 NPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 393
N ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 421 NPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 473
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 393
N ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 423 NPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 393
N ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 423 NPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 393
N ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 421 NPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 473
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 393
N ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 423 NPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK 333
LL GPPGTGKT+ ALA ++L K
Sbjct: 51 LLFYGPPGTGKTSAALAFCRQLFPK 75
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 393
N ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 423 NPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 225 VILYGCPGTGKTLLAKAVANQ--TSATFLRIVGSEL 258
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+L+ GPPG GKT +A A+A T F +VGSE
Sbjct: 198 VLMYGPPGCGKTMLAKAVA--ANTAASFIRVVGSE 230
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVP 339
+LL GPPGTGKT +A I + L + P
Sbjct: 333 ILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVP 339
+LL GPPGTGKT +A I + L + P
Sbjct: 333 ILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVP 339
+LL GPPGTGKT +A I + L + P
Sbjct: 267 ILLFGPPGTGKTLMARQIGKMLNAREP 293
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQELGTKVPFC 345
N ++ ++G PGTGKTA + + + LG V C
Sbjct: 193 NTSLSIYVSGQPGTGKTATTMRVLKSLGKSVRSC 226
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK 333
+LL GPPG GKT +A A+A+ G +
Sbjct: 117 ILLYGPPGCGKTLLAKAVARAAGCR 141
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK 333
+LL GPPG GKT +A A+A+ G +
Sbjct: 120 ILLYGPPGCGKTLLAKAVARAAGCR 144
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE-LGTKV 336
++L+GPPG GKT A+A+E LG KV
Sbjct: 46 IVLSGPPGCGKTTSVWALARELLGDKV 72
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE 321
+LL GPPG GKT +A A+A E
Sbjct: 214 ILLFGPPGNGKTLLAKAVAGE 234
>Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical
protein F54B3.3 protein.
Length = 595
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++ GPPGTGKT A ++AQ G + + + G ++
Sbjct: 345 VMFYGPPGTGKTLFAKSLAQHSG--LDYAVLTGGDI 378
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/46 (43%), Positives = 23/46 (50%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 384
G L GPPG GKT+IA +IA L + F VG EIK
Sbjct: 504 GGKILCFHGPPGVGKTSIAKSIATALNREY-FRFSVGGMTDVAEIK 548
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 402
+LL GPPGTGKT I +A + K F + S + S + + E L+
Sbjct: 352 VLLFGPPGTGKTMIGRCVASQ--CKATFFNISASSLTSKWVGEGEKLV 397
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKV 336
A LL+G PG GKT A Q+LG ++
Sbjct: 342 AALLSGSPGVGKTTCAYMACQQLGLQL 368
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKV 336
R L GPPGTGK++ A+A G V
Sbjct: 197 RRGYLFYGPPGTGKSSFISALASHFGYSV 225
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKV 336
R L GPPGTGK++ A+A G V
Sbjct: 243 RRGYLFYGPPGTGKSSFISALASHFGYSV 271
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++L G PGTGKT +A A+A T F GS++
Sbjct: 220 VILYGEPGTGKTLLAKAVAN--STSATFIRATGSDL 253
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTK 333
R L+ GPPGTGKT ++ I L K
Sbjct: 460 RPLSLIQGPPGTGKTVVSATIVYHLVQK 487
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTK 333
R L+ GPPGTGKT ++ I L K
Sbjct: 460 RPLSLIQGPPGTGKTVVSATIVYHLVQK 487
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELG 327
R +L+ G PGTGK+ + +A++LG
Sbjct: 9 RPNILVTGSPGTGKSTLGQQVAEKLG 34
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 253 AALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKT 390
+A+ ++G PGTGKTA A+ + V EV + KKT
Sbjct: 293 SAMYISGVPGTGKTATVRAVVNSMKKSKKCQKFVYVEVNAMIFKKT 338
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFC 345
++ +LL GP G GKT + +A+ L + C
Sbjct: 141 KSNVLLVGPSGVGKTFLTQTLARVLDVPIALC 172
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFC 345
++ +LL GP G GKT + +A+ L + C
Sbjct: 257 KSNVLLVGPSGVGKTFLTQTLARVLDVPIALC 288
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
L+ GPPGTGKT I + I + +
Sbjct: 827 LIQGPPGTGKTHIGVQIVKTI 847
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
LLL+GP G GK+ +A +A++ G
Sbjct: 333 LLLSGPAGLGKSTLARIVARQAG 355
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
++ GPPGTGKT +A+ I +
Sbjct: 824 MVVGPPGTGKTDVAVQIISNI 844
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
+LL G PG GK++ +A+AQ G +
Sbjct: 1352 ILLEGAPGCGKSSTVMALAQLTGNPI 1377
>AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical
protein R07C3.3 protein.
Length = 470
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/95 (28%), Positives = 39/95 (41%)
Frame = -3
Query: 295 QFCQYQEALPRVKLPGHFLTSYHIYNYPCSLTCRLLTHETGCHLNRNTIFIQPQAFYMTV 116
QF + P +K+PGHF T+ I+N +T L +L+R TV
Sbjct: 326 QFISTFQMSPDLKMPGHF-TNECIHNDTAIVTISRLARWVPIYLDR-----AAHCATGTV 379
Query: 115 SRDPLRFSCAFHFFNFHVESSFTLLNSRRYFVFSV 11
D C F +F S F +LN F +S+
Sbjct: 380 RHD----ICIFGIEDFRAISKFPILNMLPAFDYSI 410
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 425 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 324
P+ ++ S+ FL+S++ P+IGQ+ L+P
Sbjct: 96 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 129
>Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical
protein Y53C12B.5a protein.
Length = 290
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 425 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 324
P+ ++ S+ FL+S++ P+IGQ+ L+P
Sbjct: 229 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 262
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
L+L GP G GKTA+ A+A++ ++
Sbjct: 819 LVLIGPSGVGKTALFRALAKQENMRI 844
>AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative
transcription factor MAB-3 protein.
Length = 290
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 425 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 324
P+ ++ S+ FL+S++ P+IGQ+ L+P
Sbjct: 229 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,321
Number of Sequences: 27780
Number of extensions: 321753
Number of successful extensions: 804
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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