Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20602
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 128 3e-30
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 79 2e-15
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 77 1e-14
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 42 3e-04
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 42 4e-04
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 42 4e-04
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 42 5e-04
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 42 5e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 39 0.003
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 39 0.003
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 39 0.004
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 39 0.004
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 38 0.005
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 38 0.005
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 38 0.005
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 38 0.009
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 38 0.009
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 37 0.011
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 37 0.011
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 37 0.011
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 37 0.011
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 37 0.011
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 37 0.015
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 37 0.015
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 37 0.015
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 37 0.015
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 37 0.015
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 37 0.015
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 37 0.015
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 36 0.020
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 36 0.020
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 36 0.020
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 36 0.026
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 36 0.026
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 36 0.035
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 36 0.035
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 36 0.035
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 36 0.035
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.035
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 35 0.046
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 35 0.046
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 35 0.060
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 35 0.060
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 35 0.060
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 35 0.060
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 34 0.080
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 34 0.080
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 34 0.080
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 34 0.080
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 34 0.080
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 34 0.080
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 34 0.080
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 34 0.11
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 34 0.11
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 34 0.11
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 33 0.14
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 33 0.14
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 33 0.14
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 33 0.18
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 33 0.18
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 33 0.24
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 33 0.24
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 33 0.24
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.24
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 33 0.24
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 33 0.24
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 32 0.32
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 32 0.32
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 32 0.32
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 32 0.32
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 32 0.43
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 32 0.43
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 31 0.56
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 31 0.74
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 31 0.74
At1g73170.1 68414.m08466 expressed protein 31 0.74
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,... 31 0.98
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 31 0.98
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 31 0.98
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 30 1.3
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 30 1.3
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 30 1.3
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 30 1.3
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 30 1.7
At4g19060.1 68417.m02808 disease resistance protein-related cont... 30 1.7
At1g77620.1 68414.m09037 expressed protein 30 1.7
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 30 1.7
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 29 2.3
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 29 2.3
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 29 2.3
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 29 2.3
At3g25620.1 68416.m03189 ABC transporter family protein similar ... 29 2.3
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 29 2.3
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 29 2.3
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 29 3.0
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 29 3.0
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 29 3.0
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 29 3.0
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 3.0
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 29 3.0
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 29 3.0
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 29 3.0
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 29 3.0
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 29 3.0
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 29 3.0
At5g56220.1 68418.m07016 expressed protein 29 4.0
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 29 4.0
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 29 4.0
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic... 29 4.0
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 28 5.2
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 28 5.2
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 28 5.2
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 28 5.2
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 5.2
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 28 5.2
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 5.2
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 5.2
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 28 5.2
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 28 5.2
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi... 28 5.2
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 28 5.2
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 28 6.9
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 28 6.9
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 28 6.9
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 28 6.9
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 28 6.9
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 28 6.9
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 28 6.9
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 28 6.9
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 6.9
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 28 6.9
At5g45440.1 68418.m05583 disease resistance protein-related cont... 27 9.2
At5g42470.1 68418.m05170 expressed protein low similarity to BRE... 27 9.2
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 9.2
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 27 9.2
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 27 9.2
At4g12020.1 68417.m01912 protein kinase family protein similar t... 27 9.2
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 27 9.2
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 27 9.2
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 27 9.2
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 128 bits (310), Expect = 3e-30
Identities = 72/142 (50%), Positives = 88/142 (61%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRI 435
ALLLAGPPGTGKTA+AL I+QELG+KVPFCPMVGSEVYS+E+KKTEVLMENFRRAIGLRI
Sbjct: 68 ALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRI 127
Query: 436 RXXXXXXXXXXXXXXPVETENPAGAMEKQYLM*S*D*KRPRVPNNLNLIQLYMNRYKRRR 615
+ P ETE+ G K K + +L L + + +
Sbjct: 128 KETKEVYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHLKLDPTIYDALIKEK 187
Query: 616 LKLGMSFTLKLILGAVKRQGRS 681
+ +G ++ GAVKR GRS
Sbjct: 188 VAVGDVIYIEANSGAVKRVGRS 209
Score = 97.9 bits (233), Expect = 6e-21
Identities = 44/64 (68%), Positives = 56/64 (87%)
Frame = +2
Query: 65 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 244
+KIEE++STAK QRI+ H+HIKGLGL+ G+PI++AAG VGQ AREAAG+VVDMI+ KK
Sbjct: 4 VKIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKK 63
Query: 245 MAGQ 256
MAG+
Sbjct: 64 MAGK 67
Score = 94.3 bits (224), Expect = 7e-20
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = +3
Query: 510 YGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSWGSEETG*ECTF 689
YGK++SHV+I LKT KGTK LKLDPTIY++L KEKV VGDVIYIEANS + G F
Sbjct: 153 YGKSISHVVITLKTVKGTKHLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAF 212
Query: 690 ATEFD 704
ATEFD
Sbjct: 213 ATEFD 217
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/61 (55%), Positives = 49/61 (80%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRI 435
A+L+AG PGTGKTAIA+ +A+ LG + PF + GSE++S E+ KTE L ++FR+AIG+RI
Sbjct: 68 AILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFRKAIGVRI 127
Query: 436 R 438
+
Sbjct: 128 K 128
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 65 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 244
+K+ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+++ MIR K
Sbjct: 4 LKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGK 63
Query: 245 MAGQ 256
+AG+
Sbjct: 64 IAGR 67
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/65 (55%), Positives = 50/65 (76%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 423
+GRA +L+AG PGTGK AIA+ IA+ LG + PF + GSE++S E+ KTE L + FR+AI
Sbjct: 65 SGRA-ILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKAI 123
Query: 424 GLRIR 438
G+RI+
Sbjct: 124 GVRIK 128
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/64 (42%), Positives = 45/64 (70%)
Frame = +2
Query: 65 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 244
+++ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+ +++IR K
Sbjct: 4 LRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGK 63
Query: 245 MAGQ 256
++G+
Sbjct: 64 ISGR 67
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 537 IGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSWGSEETG*ECTFATEFD 704
I +KT L + E L KEKV+ GDVI ++ + G T + +FD
Sbjct: 159 ITMKTTDMESNFDLGWKLIEPLDKEKVQSGDVIVLDRFCGKITKLGRSFTRSRDFD 214
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 259 VLLTGPPGTGKTLLAKAIAGEAG--VPFFSLSGSE 291
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPG GKT +A AIA E G VPF M GSE
Sbjct: 466 VLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE 498
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 288
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 295
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 211 RDSCRYDKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
RD R+ + +LL GPPGTGKT +A AIA E G VPF GSE
Sbjct: 247 RDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE 295
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A A+A E G VPF + SE
Sbjct: 370 VLLVGPPGTGKTLLARAVAGEAG--VPFFSVSASE 402
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAI---AQELGTKVPFCPMVGSEVYSTEIKKTE 393
+LL GPPGTGKT IA A+ A + G KV F G++V S + + E
Sbjct: 418 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE 465
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 287 LLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 318
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 299 LLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 330
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL G PGTGKT +A AIA E G VPF GSE
Sbjct: 398 ILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE 430
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/90 (33%), Positives = 38/90 (42%)
Frame = +1
Query: 253 AALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLR 432
+ +L GPPG GKT +A AIA E G VPF + +EV S +E EN R
Sbjct: 268 SGILFHGPPGCGKTKLANAIANEAG--VPFYKISATEVISGVSGASE---ENIRELFSKA 322
Query: 433 IRXXXXXXXXXXXXXXPVETENPAGAMEKQ 522
R + EN MEK+
Sbjct: 323 YRTAPSIVFIDEIDAIGSKRENQQREMEKR 352
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 420
LL GPPG GKT IA A A E G F + G+E+ + + ++E+ + F+RA
Sbjct: 566 LLYGPPGCGKTLIAKAAANEAGAN--FMHIKGAELLNKYVGESELAIRTLFQRA 617
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
LL GPPGTGKT +A A A E G VPF + GS+
Sbjct: 359 LLVGPPGTGKTLLAKATAGESG--VPFLSISGSD 390
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 411
+LL+GPPGTGKT A +A+E G +PF G+E +E + E F
Sbjct: 529 VLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAAKINEMF 577
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
R+ +LL GPPGTGKT +A A+A E + F + G E+ + I ++E
Sbjct: 691 RSGVLLYGPPGTGKTLLAKAVATE--CSLNFLSVKGPELINMYIGESE 736
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
+LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 292
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 420
+L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 517 VLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFDKA 569
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQEL----GTKVPFCPMVGSEVYS 372
+LL GPPGTGKT++ A+AQ+L ++ P C ++ +S
Sbjct: 205 ILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHS 246
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 420
+L+ GPPGTGKT++A A+ G V F + G E+ S + ++E L E FR A
Sbjct: 421 VLIHGPPGTGKTSLARTFARHSG--VNFFSVNGPEIISQYLGESEKALDEVFRSA 473
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
+LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 293
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 420
+L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 518 VLFYGPPGCGKTLLAKAIANE--CQANFISIKGPELLTMWFGESEANVREIFDKA 570
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
+LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 292
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 420
+L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 517 VLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFDKA 569
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A A+A T F +VGSE
Sbjct: 192 VLLYGPPGTGKTMLAKAVANH--TTAAFIRVVGSE 224
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 372
+LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 188 ILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 223
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1
Query: 241 ENGRAALLLAGPPGTGKTAIALAIAQEL 324
EN LLL GPPGTGKT+ LA+A++L
Sbjct: 69 ENKLPHLLLYGPPGTGKTSTILAVARKL 96
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL GPPGTGKT +A AIA+E G
Sbjct: 558 ILLFGPPGTGKTMLAKAIAKEAG 580
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL GPPGTGKT +A AIA+E G
Sbjct: 553 ILLFGPPGTGKTMLAKAIAKEAG 575
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 372
+LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 389 ILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 424
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
LL GPPGTGKT +A A A E + VPF + GS+
Sbjct: 364 LLVGPPGTGKTLLAKATAGE--SAVPFLSISGSD 395
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL GPPGTGKT +A AIA E G +PF G++
Sbjct: 352 VLLHGPPGTGKTLLAKAIAGEAG--LPFFAANGTD 384
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPM 351
N A+L GPPGTGKT+ A IA + G + + P+
Sbjct: 359 NRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPL 394
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGT 330
+L+ GPPGTGKT +A A+A E GT
Sbjct: 275 VLMFGPPGTGKTLLAKAVATECGT 298
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL GPPGTGKT +A AIA E G
Sbjct: 451 ILLFGPPGTGKTMMAKAIANEAG 473
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL GPPGTGKT +A AIA+E G
Sbjct: 122 VLLYGPPGTGKTMLAKAIAKESG 144
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 35.5 bits (78), Expect = 0.035
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
+LL GPPGTGKT +A I + L K P + G EV S + +TE
Sbjct: 253 MLLFGPPGTGKTLMARQIGKMLNGKDPKI-VNGPEVLSKFVGETE 296
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
LL GP G+GKTA+A I + + P+ +V +E
Sbjct: 534 LLEGPSGSGKTALAATIG--IDSDFPYVKIVSAE 565
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL GPPGTGKT +A A+A E G
Sbjct: 1001 ILLFGPPGTGKTMLAKAVATEAG 1023
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 35.5 bits (78), Expect = 0.035
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN 408
A LL GPPGTGK+ +A A+A E + F + S++ S + ++E L+ N
Sbjct: 167 AFLLYGPPGTGKSYLAKAVATEADS--TFFSVSSSDLVSKWMGESEKLVSN 215
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQEL 324
L+L+GPPGTGKT LA+A EL
Sbjct: 51 LILSGPPGTGKTTSILALAHEL 72
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL GPPGTGKT +A A+A E G
Sbjct: 988 ILLFGPPGTGKTMLAKAVATEAG 1010
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGT 330
+LL GPPGTGKT +A A+A E T
Sbjct: 148 ILLFGPPGTGKTMLAKAVATECNT 171
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGT 330
+LL GPPGTGKT +A A+A E T
Sbjct: 139 ILLFGPPGTGKTMLAKAVATECNT 162
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 34.7 bits (76), Expect = 0.060
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 402
LLL GPPGTGKT I AIA E K F + S + S I + E L+
Sbjct: 46 LLLFGPPGTGKTMIGKAIAGE--AKATFFYISASSLTSKWIGEGEKLV 91
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 34.7 bits (76), Expect = 0.060
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK-VPFCPMVGSEVYSTEIKKTEVLMENFRRA 420
LLL GPPGTGKT++ A+ QE + P ++ E +K VL E F A
Sbjct: 59 LLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEK--VLREAFAEA 111
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQEL 324
+L GPPGTGKT ALAIA +L
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQL 54
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQEL 324
+L GPPGTGKT ALAIA +L
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQL 66
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 34.3 bits (75), Expect = 0.080
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE 321
+LL GPPGTGKT +A AIA+E
Sbjct: 125 VLLYGPPGTGKTMLAKAIARE 145
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 34.3 bits (75), Expect = 0.080
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 420
+LL GPPGTGKT +A AIA + F +V S + I + ++ E F A
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARLIREMFNYA 228
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 34.3 bits (75), Expect = 0.080
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 198 VLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 34.3 bits (75), Expect = 0.080
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 198 VLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 34.3 bits (75), Expect = 0.080
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQE 321
+LL GPPGTGKT +A A+A+E
Sbjct: 858 ILLFGPPGTGKTMLAKAVAKE 878
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 34.3 bits (75), Expect = 0.080
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAI 423
LLL GPPG GKT +A A+A E ++ F + S + S + + E L++ F+ AI
Sbjct: 252 LLLFGPPGNGKTMLAKAVASE--SQATFFNVSASSLTSKWVGEAEKLVKTLFQVAI 305
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 34.3 bits (75), Expect = 0.080
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 420
+LL GPPGTGKT +A AIA + F +V S + I + ++ E F A
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARLIREMFNYA 228
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELG 327
+LL GPPG GKT +A A+A E G
Sbjct: 446 ILLCGPPGVGKTLLAKAVAGEAG 468
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 420
+L GPPG+GKT +A A+A G F +VGSE+ I + ++ E F+ A
Sbjct: 242 VLCYGPPGSGKTLVARAVANRTG--ACFIRVVGSELVQKYIGEGARMVRELFQMA 294
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+L GPPGTGKT +A A+A T F ++GSE+
Sbjct: 205 VLCYGPPGTGKTLLARAVANR--TDACFIRVIGSEL 238
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 225 VILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKV 336
LL GPP +GKT + LA+A LGT +
Sbjct: 165 LLLGPPSSGKTTLLLALAGRLGTNL 189
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 225 VILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS-TEIKKTEVLM 402
Y K + LL GPPGTGK+++ A+A LG + + +EV+S +E++K +LM
Sbjct: 229 YQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL--TEVHSNSELRK--LLM 284
Query: 403 ENFRRAI 423
+ ++I
Sbjct: 285 KTSSKSI 291
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL G PGTGKT +A A+A E +VPF SE
Sbjct: 361 VLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASE 393
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
+LL G PGTGKT +A A+A E + VPF SE
Sbjct: 365 VLLVGLPGTGKTLLAKAVAGE--SDVPFISCSASE 397
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK 333
L GPPG GKT++A +IA LG K
Sbjct: 404 LCFVGPPGVGKTSLASSIAAALGRK 428
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++ GPPGTGKT +A IA++ G + + M G +V
Sbjct: 373 MMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 406
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 223 RYDKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
R++K +LL GPPGTGKT +A A A + T F + G ++
Sbjct: 196 RFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 241
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
++ GPPGTGKT +A IA++ G + + M G +V
Sbjct: 388 MMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 421
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
+LL GP GTGKT +A A+A E G +
Sbjct: 773 ILLFGPSGTGKTMLAKAVATEAGANL 798
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 384
+ L+GPPG GKT+I +IA+ L K F VG EIK
Sbjct: 460 ICLSGPPGVGKTSIGRSIARALNRKF-FRFSVGGLADVAEIK 500
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQELG 327
Y K + LL GPPGTGK+++ A+A LG
Sbjct: 230 YQKTGRAWKRGYLLYGPPGTGKSSLIAAMANYLG 263
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT A +A++ G + + M G +V
Sbjct: 400 ILLHGPPGTGKTMAARELARKSG--LDYALMTGGDV 433
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQEL 324
GR ALLL GPP +GKT + LA+A +L
Sbjct: 180 GRMALLL-GPPSSGKTTLLLALAGKL 204
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPGTGKT++ AIA L
Sbjct: 249 LLYGPPGTGKTSLVAAIANYL 269
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+LL GPPGTGKT +A A A + T F + G ++
Sbjct: 207 VLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 240
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQEL 324
GR LLL GPPG+GK+ + LA+A +L
Sbjct: 186 GRMTLLL-GPPGSGKSTLLLALAGKL 210
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 241 ENGRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVY 369
++G +LLAG G GKT + +A L + C ++ +VY
Sbjct: 173 KSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVY 215
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK 333
+ L+GPPG GKT+I +IA+ L K
Sbjct: 443 ICLSGPPGVGKTSIGRSIARALDRK 467
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELG 327
+LLL GPPG GKT + +A+ LG
Sbjct: 199 SLLLIGPPGVGKTTMIREVARMLG 222
>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
EMBL:AF071172; isoform contains non-consensus GG
acceptor splice site at intron 6
Length = 788
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/34 (32%), Positives = 25/34 (73%)
Frame = +3
Query: 549 TAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEAN 650
T G+K LDP+ E++++E++++GD + ++A+
Sbjct: 639 TPAGSKTWMLDPSEVETIEEEELKIGDWVRVKAS 672
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPGTGK+++ AIA L
Sbjct: 251 LLYGPPGTGKSSLIAAIANHL 271
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQEL 324
GR LLL GPP +GKT + LA+A +L
Sbjct: 197 GRMTLLL-GPPSSGKTTLLLALAGKL 221
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+L GPPGTGKT A +A+ G + + M G +V
Sbjct: 401 ILFYGPPGTGKTMAARELARRSG--LDYALMTGGDV 434
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 366
+L+ G GTGKT++ALAIA E +VP + E+
Sbjct: 460 VLIVGERGTGKTSLALAIAAE--ARVPVVNVEAQEL 493
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYST-EIKKTEVLMENFRRAI 423
LL GPPGTGK+++ A+A L K + S +Y E+K+ VL+ R+I
Sbjct: 247 LLYGPPGTGKSSLIAAMANYL--KFDVFDLELSSIYDNGELKR--VLLSTTNRSI 297
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
+LL G PG GKT++ LA+ + G KV
Sbjct: 1748 ILLEGSPGVGKTSLILALGKYSGHKV 1773
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPM 351
+LL GP G+GK+A+ +A E G V F M
Sbjct: 356 VLLYGPSGSGKSALIRKLADESGNHVVFIHM 386
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELG 327
+ A+LL+G PG GKT A ++Q LG
Sbjct: 393 KKAVLLSGTPGIGKTTSAKLVSQMLG 418
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
L + G G GKT + A+ + K + P + +YS E K+ E
Sbjct: 117 LAIVGKYGVGKTTLCQAVFNDEDVKQVYFPRIWVSMYSKETKEDE 161
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 241 ENGRAALLLAGPPGTGKTAIALAIAQELGTKV 336
++ + LL+ GP G+GK+A A A+E G K+
Sbjct: 382 DSQKNVLLIVGPAGSGKSAAIHACAKEQGFKI 413
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPGTGK+++ AIA +
Sbjct: 243 LLYGPPGTGKSSMVAAIANHM 263
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIA 315
LL GPPGTGK+++ AIA
Sbjct: 35 LLYGPPGTGKSSLVAAIA 52
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPGTGK+++ A+A L
Sbjct: 303 LLYGPPGTGKSSLIAAMANHL 323
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKV 336
Y K + + LL GPPGTGK+ + A+A L +
Sbjct: 228 YKKIGKAWKRGYLLHGPPGTGKSTMIAAMANHLNYSI 264
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQEL 324
Y K + + LL GPPGTGK+ + AIA L
Sbjct: 235 YKKVGKPWKRGYLLFGPPGTGKSTMIAAIANFL 267
>At3g25620.1 68416.m03189 ABC transporter family protein similar to
GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
6 (4), 343-356 (1997))
Length = 467
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKK 387
L + GP G+GKT + A+A L K+ E +++ +K+
Sbjct: 113 LAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKR 155
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 423
LL GPPGTGK+++ A+A L K + S +Y K+ +L+ R+I
Sbjct: 248 LLYGPPGTGKSSLIAAMANYL--KFDVFDLELSSIYENAQLKS-ILLSTTNRSI 298
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAIA-QEL--GTKVPFC 345
+ + LL GPPGTGKT + I QE+ G+K+ C
Sbjct: 203 SSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILAC 239
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPGTGK+++ A+A L
Sbjct: 257 LLYGPPGTGKSSLVAAMANYL 277
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPGTGK+++ A+A L
Sbjct: 257 LLYGPPGTGKSSLVAAMANYL 277
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPGTGK+++ A+A L
Sbjct: 249 LLYGPPGTGKSSLVAAMANYL 269
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQEL 324
Y++ + LL GPPGTGK+++ A+A L
Sbjct: 229 YERTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPPG GKT + LA++ L
Sbjct: 166 LLLGPPGCGKTTLLLALSGRL 186
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 405
GR LLL GPPG GKT + A++ + V VG EV +E + E
Sbjct: 167 GRMTLLL-GPPGCGKTTLLQALSGKFSDSV----KVGGEVCYNGCSLSEFIPE 214
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQELGTKV 336
GR LLL GPPG GKT + A++ L V
Sbjct: 164 GRMTLLL-GPPGCGKTTLLQALSGRLSHSV 192
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 265 LAGPPGTGKTAIALAIAQELGTKVPFCPMV 354
+ GPPG GKT IA + + PF ++
Sbjct: 239 ILGPPGIGKTTIATCMFDRFSRRFPFAAIM 268
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIA 315
YD+ + + LL GPPGTGK+ + A+A
Sbjct: 228 YDRIGKAWKRGYLLYGPPGTGKSTMIAAMA 257
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPP +GKT + LA+A +L
Sbjct: 177 LLLGPPSSGKTTLLLALAGKL 197
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
LL GPP +GKT + LA+A +L
Sbjct: 199 LLLGPPSSGKTTLLLALAGKL 219
>At5g56220.1 68418.m07016 expressed protein
Length = 973
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 220 CRYDKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 363
CR + ++ + + + G PG GKT +AL A + VG E
Sbjct: 429 CRNNSNCKSSTSVVCVNGVPGIGKTELALEFAYRYSQRYKMVLWVGGE 476
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 265 LAGPPGTGKTAIALAIAQELGTKVPFCPMV 354
+ GPPG GKT IA + ++ K F +
Sbjct: 260 ILGPPGIGKTTIARVLYDQISEKFQFSAFI 289
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQEL 324
Y K + + LL GPPGTGK+ + AIA L
Sbjct: 220 YRKVAKPWKRGYLLFGPPGTGKSTMISAIANFL 252
>At2g34470.1 68415.m04231 urease accessory protein (UREG) identical
to urease accessory protein UREG GI:4324678 from
[Arabidopsis thaliana]; contains Pfam profile: PF01495
HypB/UreG nucleotide-binding domain
Length = 275
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 265 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTE 378
+ GP GTGKTA+ LA+ + L K V +++++ E
Sbjct: 78 IGGPVGTGKTALMLALCRFLRDKYSLA-AVTNDIFTKE 114
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQ 318
R LL+ G PGTGK+ A A+A+
Sbjct: 13 RPNLLITGTPGTGKSTTASALAE 35
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 265 LAGPPGTGKTAIALAIAQELGT 330
L G PG GKTAIA +AQ + +
Sbjct: 300 LIGEPGVGKTAIAEGLAQRIAS 321
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
L+ GPPGTGKT + AI +
Sbjct: 507 LIQGPPGTGKTVTSAAIVYHM 527
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 271 GPPGTGKTAIALAIAQELGTKVPFCPMVGS 360
GP G GKT IA A+ +L T F +G+
Sbjct: 212 GPAGIGKTTIARALYNQLSTNFQFKCFMGN 241
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 241 ENGRAALL-LAGPPGTGKTAIALAIAQEL 324
E+G ++ + GPPG GKT IA A+ ++
Sbjct: 210 ESGDVRMIGIVGPPGIGKTTIARALRDQI 238
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQ 318
+L+ GPPG+GKT +A A A+
Sbjct: 596 ILIYGPPGSGKTILARAAAK 615
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 393
R+ +LL GPPG GKT I A A + F + G E+ + I +E
Sbjct: 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR--FISVKGPELLNKYIGASE 923
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAI 312
++ +L+ GPPGTGKT L+I
Sbjct: 273 KSFVLIQGPPGTGKTQTILSI 293
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 265 LAGPPGTGKTAIALAIAQELGT 330
L G PG GKTAIA +AQ + +
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIAS 342
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKV 336
Y K + + LL GPPGTGK+ + A+A L +
Sbjct: 228 YKKIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYSI 264
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 247 GRAALLLAGPPGTGKTAIALAIAQEL 324
GR LLL GPPG GKT + A++ L
Sbjct: 165 GRLTLLL-GPPGCGKTTLLKALSGNL 189
>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
protein
Length = 528
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -3
Query: 196 RLLTHETGCHLNR----NTIFIQPQAFYMTVSRDPLRFS 92
+L TH+ GC++ + NT+ +Q + +SRD LR S
Sbjct: 368 QLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLS 406
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTKV 336
LLL G PG GKT +A A+ G +V
Sbjct: 348 LLLCGAPGLGKTTLAHIAAKHCGYRV 373
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQEL 324
Y K + + LL GPPGTGK+ + A+A L
Sbjct: 235 YKKIGKAWKRGYLLFGPPGTGKSTMIAAMANLL 267
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKV 336
Y K + + LL GPPGTGK+ + A+A L +
Sbjct: 233 YKKIGKAWKRGYLLYGPPGTGKSTMISAMANLLNYNI 269
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAIALAIAQEL 324
+ + L GPPGTGK+++ A+A L
Sbjct: 220 KRSYFLYGPPGTGKSSLVAAMANYL 244
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQEL 324
+ L GP G GKT +A A+A++L
Sbjct: 566 SFLFLGPTGVGKTELAKALAEQL 588
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQEL 324
Y K + + LL GPPGTGK+ + A+A L
Sbjct: 232 YKKIGKAWKRGYLLFGPPGTGKSTMIAAMANFL 264
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 259 LLLAGPPGTGKTAIALAIAQELGTK 333
+ L+GP G GKT+I +IA+ L K
Sbjct: 452 ICLSGPTGVGKTSIGRSIARALDRK 476
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQEL 324
+ L GP G GKT +A A+A++L
Sbjct: 601 SFLFLGPTGVGKTELAKALAEQL 623
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 244 NGRAALLLAGPPGTGKTAIALAI 312
N +++ GPPGTGKT+IA ++
Sbjct: 135 NRLPSIVFWGPPGTGKTSIAKSL 157
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
L+ GPPGTGKT +AI L
Sbjct: 1128 LIQGPPGTGKTRTIVAIISGL 1148
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 588 IYESLQKEKVEVGDVIYIEANSWGSEETG*ECTF 689
+Y L E VG V+Y+EA++ G TG C F
Sbjct: 563 MYPRLFWETGVVGQVLYLEAHAMGISATGIGCYF 596
>At5g45440.1 68418.m05583 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 346
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 256 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKK 387
+L++ G G GKTA+ I + + + P + ++S E K+
Sbjct: 80 SLVVVGEYGVGKTALCQQIFNDYDVRNAYAPRIWVSMHSNESKE 123
>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
alpha b isoform [Homo sapiens] GI:16326573
Length = 382
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 140 LDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAG 253
L G+ +QMA+G+ E + A +V+DM +K + G
Sbjct: 149 LTRKGIEMQMASGVDKPEEVKFAVPLVMDMNINKMVVG 186
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 250 RAALLLAGPPGTGKTAI---ALAIAQELGTKV 336
R +++ GPPGTGKT + + +A + G +V
Sbjct: 503 RPVMIVQGPPGTGKTGMLKEVITLAVQQGERV 534
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 232 KK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKV 336
KK ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 232 KK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKV 336
KK ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 271 GPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 411
G G GKT IA I +++ + C ++ E+K + + ENF
Sbjct: 844 GTVGIGKTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDAVRENF 890
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 226 YDKK*ENGRAALLLAGPPGTGKTAIALAIAQEL 324
Y K + + LL GPPGTGK+ + A+A L
Sbjct: 231 YRKVGKPWKRGYLLFGPPGTGKSTMISAMANFL 263
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 262 LLAGPPGTGKTAIALAIAQEL 324
++ G PG GKTAIA +AQ +
Sbjct: 284 VIIGEPGVGKTAIAEGLAQRI 304
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 229 DKK*ENGRAALLLAGPPGTGKTAIALAIAQELGTKVPF 342
D E ++ +LL GP G+GKT +A +A+ + VPF
Sbjct: 301 DDNVELDKSNVLLMGPTGSGKTLLAKTLARLV--NVPF 336
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,816
Number of Sequences: 28952
Number of extensions: 295852
Number of successful extensions: 960
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -