SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20601
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    33   0.020
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    32   0.047
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    30   0.25 
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    29   0.33 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.58 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   1.3  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   4.1  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   4.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.2  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   7.2  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   7.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.5  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   9.5  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   9.5  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   9.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.5  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 222 YVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQ 332
           Y ++     P    Y   NY PPQ + YPQ  YAPPQ
Sbjct: 7   YGDKGYAPAPPQQAYGGPNYYPPQQN-YPQQGYAPPQ 42



 Score = 31.9 bits (69), Expect = 0.062
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +3

Query: 249 PAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
           P    YPQ  YAPPQ   YPQ  Y   Q  Y
Sbjct: 28  PPQQNYPQQGYAPPQG--YPQGGYPAQQPMY 56



 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 282 APPQNSYYPQNTYAPPQN 335
           APPQ +Y   N Y P QN
Sbjct: 15  APPQQAYGGPNYYPPQQN 32


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 32.3 bits (70), Expect = 0.047
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +3

Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
           P P  P   S  V  S   D   N Y  +   PP    +PQ +Y  P  ++
Sbjct: 309 PSPCCPSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTSF 359


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 168 QLVRTFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNT 317
           +L+RT+ P   YP E +K +  S +AD  +N     N   P  S   +NT
Sbjct: 159 ELIRTYFPND-YPKEANKDIPSSAEADTMLNLESSENREQP-TSLKEENT 206


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 162 CIQLVRTFEPEPAYPVETSKYVER-STQADPAINTYPQNNYAPPQNSYYPQN 314
           CIQ +RTF+ +   PV T    +  S      I+  P+ + +PP  S + +N
Sbjct: 110 CIQQLRTFQQQGYIPVITWPNTDSPSATTSSPISRNPEYSVSPPNGSKFVKN 161


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNY-APPQNSYYP-QNTYAPP 329
           P PA     ++    + Q  P    YPQ  Y  P Q +YYP Q  YA P
Sbjct: 84  PAPAPAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNP 503
           VP+  +   YG + SY YE  I + T+  +  Y  +P
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHP 308


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
 Frame = +3

Query: 162 CIQLVRTFEPEPAYPVETSKYVERSTQAD----PAINTYPQNNYAPPQNSYYP 308
           C  L R   P P        Y ++  Q        I  YP   Y P QN  +P
Sbjct: 298 CKNLTRRLRPAPLVSSRYLAYQQQQQQQQMNLQQGIQGYPHQGYMPTQNIGFP 350


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 255 INTYPQNNYAPPQNSYYPQNTYA 323
           IN  P+  + PP +SY+P+  +A
Sbjct: 60  INNDPKVRFLPPVDSYHPKRNHA 82


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 482 LAYVCSIGDLILVFVTAIITIIHF 411
           + ++ +IGD   +F T I+T + F
Sbjct: 472 IGFITAIGDFAWIFTTIIVTTVAF 495


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 QADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
           +A P     P+ +   PQ++Y P   Y  P
Sbjct: 49  RARPGATAVPRRSPTSPQSAYVPATVYTSP 78


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 432 GSYKYEYQIADGTHVGEEGYFTNPNTKRQ 518
           G YK+EY   D  + G+   F + N+ RQ
Sbjct: 177 GDYKWEYLFVDVANYGKIIIFDHTNSVRQ 205


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +3

Query: 189  PEPAYPVETSKYVERSTQADPAINTYPQNNYAP---PQNSYYPQNTYAP 326
            P P  PV     V  +++   + N  P N Y P     ++  P +TY P
Sbjct: 954  PNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKP 1002


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 518  LPLRIGIREVAFLAYVCSIGDLILVFVTAIITIIH 414
            LP  I I  +  + Y  S+G  ++ F   +I +IH
Sbjct: 1255 LPFHIQIGHIDAVNYCISLGSELITFSDELIRLIH 1289


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 165 IQLVRTFEPEPAYPVETSKY 224
           ++ VR+  P P YP+E+S++
Sbjct: 587 LRYVRSKSPTPYYPIESSEF 606


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 138 LRPQHGC*CIQLVRTFEPEPAYPV 209
           L P+ GC C+ +     PE  +PV
Sbjct: 116 LTPKFGCVCVSVDYRLAPESKFPV 139


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 525 TRLASSY-WDS*SSLPRLRVFHRRFDTR 445
           TR  S + WD  S  P  ++FH++FD +
Sbjct: 455 TRSFSRFSWDMFSESPVYQLFHKKFDVQ 482


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 189 PEPAYPVETSKY---VERSTQADPAINTYPQNNYAPPQNSYYPQNT-YAPPQNTYR 344
           P+P++P     Y   +   +QA+P +    Q +  PPQ S+ P +  Y    ++YR
Sbjct: 460 PQPSFPPFHPIYNDSIGYYSQANPQMYYANQVSAPPPQGSFDPNSKFYRNSSDSYR 515


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 329 SKHLSSHLEHAFISDFDYNNSR 394
           +K  +SH+ +AFIS FD+   R
Sbjct: 605 TKGSNSHILNAFISAFDFKGKR 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,075
Number of Sequences: 5004
Number of extensions: 36663
Number of successful extensions: 138
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -