Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20601
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 33 0.11
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 32 0.25
01_07_0082 - 40965947-40967023 31 0.58
01_06_1682 - 39130696-39131705,39132355-39132583 28 5.4
06_02_0024 - 10714741-10716241,10716774-10717840 27 7.2
06_01_0824 - 6219477-6219556,6220427-6220808,6221415-6221448,622... 27 7.2
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 27 9.5
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296 27 9.5
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 27 9.5
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 249 PAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
P YP PP SY PQ +Y PPQ Y
Sbjct: 209 PQGGAYPPPGSYPPPGSYPPQGSYPPPQGYY 239
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 264 YPQNNYAPPQNSYYPQNTYAPPQNTY 341
YPQ PP SY P +Y PPQ +Y
Sbjct: 208 YPQGGAYPPPGSYPPPGSY-PPQGSY 232
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 EPE-PAYPVETSKYVERSTQADPAINTYPQNNYAPPQNS 299
EPE P+Y VET + V T ADP + T P + +N+
Sbjct: 404 EPEVPSYQVETEEKVAELTVADPTVETMPLQDIHNEENA 442
>01_07_0082 - 40965947-40967023
Length = 358
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
+ P+ YP T+ A PQ+ Y PP P Y PP
Sbjct: 170 YPPQSTYPPPTAYPTAAKADGSAAAAYPPQSAYPPPGKGNEPSTAYPPP 218
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 267 PQNNY-APPQNSYYPQNTYAPPQNTY 341
PQ++Y +PP Y P N+Y P +Y
Sbjct: 231 PQSSYHSPPPYQYTPPNSYQAPPTSY 256
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +3
Query: 267 PQNNYAPPQ---NSYYPQNTYAPPQNTY 341
P N Y PP NS PQ ++PP N+Y
Sbjct: 271 PTNKYLPPPYYFNSPPPQYQHSPPANSY 298
>06_02_0024 - 10714741-10716241,10716774-10717840
Length = 855
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 497 REVAFLAYVCSIGDLILVFVTAIITIIHFILDHWDGS 387
R+ + V +I +LV+V +I I+ F LDH DGS
Sbjct: 469 RDASTSINVMAIAGAVLVYV--VIHIVFFTLDHNDGS 503
>06_01_0824 -
6219477-6219556,6220427-6220808,6221415-6221448,
6222214-6222370,6224449-6224575,6224663-6224914
Length = 343
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNT--YAPPQNTYR 344
P PA+ + Y+ R T PA ++ PP Y+P + + PP Y+
Sbjct: 138 PPPAF--QGPPYIARGTPPPPAQMMPQPQHHGPPATIYHPSQSWYWYPPDYQYQ 189
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 263 LSPKQLRPPSKLILSSEYLCTSSK 334
LSP++ R PS L LSS YL S+K
Sbjct: 1458 LSPEESRKPSGLQLSSTYLQGSTK 1481
>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
Length = 191
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +3
Query: 252 AINTYPQNNY--APPQNSYYPQNTYAPP 329
A N YP Y APP YY Y PP
Sbjct: 83 AANQYPYRYYPGAPPPAPYYGNGGYPPP 110
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 239 PSRSSHKHLSPKQLR-PPSKLILSSEYLCTSSKHLSSHLEHAFISDF 376
PS S+ LSP PP+ LI S +L + +H F+S F
Sbjct: 36 PSASAASPLSPVPASVPPTALIPGSRFLVDAFRHAGDFTASYFLSHF 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,104
Number of Sequences: 37544
Number of extensions: 250062
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -