Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20601
(536 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 31 0.45
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 31 0.79
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 29 2.4
SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05) 29 3.2
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 28 4.2
SB_29922| Best HMM Match : DUF1047 (HMM E-Value=7.3) 28 4.2
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_34800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_33213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 4.2
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 28 5.6
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 5.6
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 28 5.6
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 7.3
SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +3
Query: 123 STKQKLRPQHGC*CIQLVRTFEPEPAYPVETSKYVERSTQADPAINTY--PQNNYAPPQN 296
ST+ +L G C+ + ++PE + Y P +Y P +Y PP
Sbjct: 388 STRDQLSKVSGLGCV--IFLYDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHK 445
Query: 297 SYY-PQNTYAPPQNTYR 344
SY P +Y PP +Y+
Sbjct: 446 SYQPPHKSYQPPHKSYQ 462
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P +Y Y P +Y P +Y PP SY P +Y PP +Y+
Sbjct: 429 PHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQ 483
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P +Y Y P +Y P +Y PP SY P +Y PP +Y+
Sbjct: 422 PYKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQ 476
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P +Y Y P +Y P +Y PP SY P +Y PP +Y+
Sbjct: 443 PHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYKSYQ 497
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 351 RWDDRCFEEVHRYSEDSMSFEGGRNCFGDKCLWLDRLGWTVPRIL 217
RW+ + F+E +RY FE R KC ++GW++ R++
Sbjct: 150 RWEWQYFDECYRYFRTQTCFENHRRV---KCSVCKKVGWSMDRLV 191
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYP--QNNYAPPQNSYYPQNTYAPP 329
P YP+ T++Y + + N YP N Y P+N Y P PP
Sbjct: 622 PTNRYPLPTNRYPLPTNRYPLPTNRYPIPTNRYPLPKNRYPPPYKQVPP 670
>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 348 WDDRCFEEVHRYSEDSMSFEGGRNCFGDKCLWLDRLGWTVPR 223
WD + E++ Y ED F G FG LW + + +PR
Sbjct: 49 WDKNGYGEIYLYDEDMEIFAGATPKFGRVILWPSHIPY-LPR 89
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 465 HRRFDTRICNCHYHHNTFHS 406
HR F CNCHY +N +S
Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 204 PVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 344
PV+ Y+ + PQ APP NSY + Y PP YR
Sbjct: 655 PVQMFDYLPPGQSGRSMRPSMPQYPQAPPYNSYQSRQQY-PPMPPYR 700
>SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)
Length = 322
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 305 SSEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQ 406
S EY SKHLS L H +IS+ + S +D+
Sbjct: 71 SKEYKEKMSKHLSDFLPHLYISNMYSSKSTANDE 104
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 483 EGYFTNPNTKRQAW*K 530
E YFTNPN RQ W K
Sbjct: 326 ESYFTNPNLYRQRWVK 341
>SB_29922| Best HMM Match : DUF1047 (HMM E-Value=7.3)
Length = 210
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 483 EGYFTNPNTKRQAW*K 530
E YFTNPN RQ W K
Sbjct: 191 ESYFTNPNLYRQRWVK 206
>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPP 290
Q P + TYP NNY PP
Sbjct: 19 QGYPGVQTYPINNYPPP 35
>SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 483 EGYFTNPNTKRQAW*K 530
E YFTNPN RQ W K
Sbjct: 83 ESYFTNPNLYRQRWVK 98
>SB_34800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 483 EGYFTNPNTKRQAW*K 530
E YFTNPN RQ W K
Sbjct: 220 ESYFTNPNLYRQRWVK 235
>SB_33213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 483 EGYFTNPNTKRQAW*K 530
E YFTNPN RQ W K
Sbjct: 37 ESYFTNPNLYRQRWVK 52
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 171 LVRTFEPEPAYPVETSKYVERSTQADPAINTYPQN--NYAPPQNSYYPQNTYAPP 329
L+R P YP +Y + P+++ YPQ+ Y P Y P + PP
Sbjct: 282 LIRYPTLPPRYPPSPPRYPPSPPRYPPSLHRYPQSPLRYPPSPIRYPPLPSRYPP 336
>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 27.9 bits (59), Expect = 5.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 294 FEGGRNCFGDKCLWLDR 244
F+GG +CF C+W R
Sbjct: 424 FDGGLSCFSASCIWFSR 440
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 192 EPAYPVETSKYVERSTQADPAINTYP--QNNYAPPQNSYYPQNTYAPP 329
+P+YP S Y+ P YP Q +Y P +SY P PP
Sbjct: 513 QPSYPPTPSSYLPTQPYYPPP-QPYPPTQPSYPPTPSSYPPTQPSYPP 559
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 195 PAYPVETSKYVERSTQADPAINTY-PQNNYAPPQNSYYP-QNTYAPPQNTY 341
P+YP Y + P Y P Y P Q SY P ++Y P Q +Y
Sbjct: 507 PSYPPTQPSYPPTPSSYLPTQPYYPPPQPYPPTQPSYPPTPSSYPPTQPSY 557
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 192 EPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAP 326
EP VE + VE ++ A+P P N P ++ P NT P
Sbjct: 78 EPTSTVEPTNTVEPTSTAEPTNTVEPTNT-VEPTSTVEPTNTVEP 121
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 509 RIGIREVAFLAYVCSIGDLILVFVTAIITIIHF 411
R+G ++ F + + S +L LVFV+ ++ II F
Sbjct: 1016 RLGSAKILFRSLISSKNELFLVFVSVMVPIILF 1048
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 234 STQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
STQ P YP P Q YYP T PP
Sbjct: 136 STQQQPGSGGYPM--MYPQQPGYYPAGTAPPP 165
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 267 PQNNYAPPQNSYYPQNTYAPPQN 335
P Y PP N YP Y PP N
Sbjct: 144 PNAPYPPPPNPPYPPPLYPPPPN 166
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 264 YPQNNYAPPQNSYYPQNTYAPPQN 335
YP PP N+ YP Y PP N
Sbjct: 161 YPPPPNPPPPNAPYPPPPYPPPPN 184
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQAD---PAINTYPQNNYAPPQNSYYPQNTYAPP 329
P P YP + S A P YP Y PP N P Y PP
Sbjct: 128 PNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 195 PAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 344
P+YP +Y Q P YPQ P Q Y Q A PQ R
Sbjct: 963 PSYPSYPQQYP--MLQPYPQQQPYPQQQPYPQQRQYAGQQMVACPQQVLR 1010
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 180 TFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
++ P+P YP + Y ++ P YPQ Y PPQ Y P Y Q Y
Sbjct: 157 SYPPQP-YPAQP--YPQQGYPPQPPPQAYPQPGY-PPQ-GYPPTGPYPQTQPGY 205
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 276 CFGDKCLWLDRLGWTVPRILR 214
CFG C+ +DR G VP LR
Sbjct: 4658 CFGSVCICVDRYGVEVPGTLR 4678
>SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 180 TFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPP 290
T +P PA + ++ R + P INT P APP
Sbjct: 191 TPQPAPAVTSQPQDHLTRDPEPTPDINTLPLPADAPP 227
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 212 NLKIRGTVHPSRSSHKHLSPKQLRPPSKLILSSEYLCTSSKHLSSHL 352
N K V + SSH LS R S ILS CT S H SHL
Sbjct: 611 NYKYAPLVTRTLSSHT-LSRPVTRTLSSHILSRPVTCTLSSHTLSHL 656
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,831,683
Number of Sequences: 59808
Number of extensions: 282176
Number of successful extensions: 989
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -