Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20601
         (536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ295977-1|CAC14125.1|   80|Homo sapiens immunoglobulin heavy ch...    30   6.0  
BC093746-1|AAH93746.2|  778|Homo sapiens PDZ domain containing R...    29   7.9  
BC093744-1|AAH93744.1|  778|Homo sapiens PDZ domain containing R...    29   7.9  
AK131554-1|BAD18688.1|  776|Homo sapiens protein ( Homo sapiens ...    29   7.9  

>AJ295977-1|CAC14125.1|   80|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 80

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 215 GFHWIGGLWFEGAYELYALAAVLRSKLLLSR 123
           G  W+  +W++G+Y+ Y  AA ++ +  +SR
Sbjct: 14  GLEWVAVIWYDGSYKYY--AASVKGRFTISR 42


>BC093746-1|AAH93746.2|  778|Homo sapiens PDZ domain containing RING
           finger 4 protein.
          Length = 778

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 275 QLRPPSKLILS-SEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQE 409
           +LRPP+  +     +L + S H    +EH F  D +Y +S P+D +
Sbjct: 90  KLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYISSLPADAD 135


>BC093744-1|AAH93744.1|  778|Homo sapiens PDZ domain containing RING
           finger 4 protein.
          Length = 778

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 275 QLRPPSKLILS-SEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQE 409
           +LRPP+  +     +L + S H    +EH F  D +Y +S P+D +
Sbjct: 90  KLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYISSLPADAD 135


>AK131554-1|BAD18688.1|  776|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16796 fis, clone TBAES2008133, moderately
           similar to Mus musculus semaF cytoplasmic domain
           associated protein 3. ).
          Length = 776

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 275 QLRPPSKLILS-SEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQE 409
           +LRPP+  +     +L + S H    +EH F  D +Y +S P+D +
Sbjct: 88  KLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYISSLPADAD 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,572,776
Number of Sequences: 237096
Number of extensions: 1350491
Number of successful extensions: 4467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4454
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)