Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20601
(536 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-1466|AAM68675.1| 330|Drosophila melanogaster CG30045-P... 44 2e-04
AY071610-1|AAL49232.1| 195|Drosophila melanogaster RE65906p pro... 43 3e-04
AE014296-3609|AAF51772.1| 195|Drosophila melanogaster CG14569-P... 43 3e-04
AE014296-1088|AAF50683.1| 239|Drosophila melanogaster CG12330-P... 43 3e-04
BT024398-1|ABC86460.1| 150|Drosophila melanogaster IP05065p pro... 36 0.035
AE013599-1237|AAF58694.1| 135|Drosophila melanogaster CG9079-PA... 36 0.035
BT001593-1|AAN71348.1| 750|Drosophila melanogaster RE27538p pro... 33 0.25
AY071231-1|AAL48853.1| 217|Drosophila melanogaster RE26879p pro... 33 0.25
AE014296-790|AAF47859.2| 750|Drosophila melanogaster CG15005-PA... 33 0.25
AE013599-2993|AAF57484.2| 217|Drosophila melanogaster CG9036-PA... 33 0.25
U84750-1|AAB88068.1| 101|Drosophila melanogaster cuticle protei... 33 0.33
AY113609-1|AAM29614.1| 105|Drosophila melanogaster RH61147p pro... 33 0.33
AE014296-1086|AAF50685.2| 105|Drosophila melanogaster CG10297-P... 33 0.33
AY071171-1|AAL48793.1| 171|Drosophila melanogaster RE21944p pro... 32 0.43
AE014296-3610|AAF51773.2| 171|Drosophila melanogaster CG14568-P... 32 0.43
BT029065-1|ABJ16998.1| 175|Drosophila melanogaster IP07570p pro... 31 0.75
AE013599-1482|AAF58515.1| 190|Drosophila melanogaster CG8515-PA... 31 0.75
AY119097-1|AAM50957.1| 173|Drosophila melanogaster LP12385p pro... 31 1.00
AE014298-1915|AAF48282.1| 173|Drosophila melanogaster CG15757-P... 31 1.00
AE014296-857|AAN11604.1| 266|Drosophila melanogaster CG32249-PA... 31 1.00
AE013599-1242|AAF58689.1| 369|Drosophila melanogaster CG13222-P... 31 1.3
AY119036-1|AAM50896.1| 137|Drosophila melanogaster LP06027p pro... 30 1.7
AE014296-3598|AAF51762.1| 137|Drosophila melanogaster CG7160-PA... 30 1.7
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 30 2.3
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 30 2.3
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 30 2.3
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 30 2.3
AY071102-1|AAL48724.1| 321|Drosophila melanogaster RE16136p pro... 29 3.0
AE014297-3695|AAF56384.1| 208|Drosophila melanogaster CG11786-P... 29 3.0
AE014296-860|AAF47910.2| 321|Drosophila melanogaster CG7465-PA ... 29 3.0
AE013599-1472|AAF58520.1| 166|Drosophila melanogaster CG8836-PA... 29 3.0
BT024331-1|ABC86393.1| 296|Drosophila melanogaster IP10364p pro... 29 4.0
AY094868-1|AAM11221.1| 228|Drosophila melanogaster RE35615p pro... 29 4.0
AY070959-1|AAL48581.1| 235|Drosophila melanogaster RE05963p pro... 29 4.0
AE014297-4063|AAF56661.2| 235|Drosophila melanogaster CG15884-P... 29 4.0
AE014297-3977|AAN14081.2| 325|Drosophila melanogaster CG31081-P... 29 4.0
AE014296-3608|AAF51771.1| 228|Drosophila melanogaster CG14570-P... 29 4.0
AE013599-2161|AAF58076.3| 296|Drosophila melanogaster CG8395-PA... 29 4.0
BT011122-1|AAR82789.1| 201|Drosophila melanogaster LD11394p pro... 29 5.3
AY071554-1|AAL49176.1| 102|Drosophila melanogaster RE62456p pro... 29 5.3
AE014298-2000|AAF48343.1| 186|Drosophila melanogaster CG1368-PA... 29 5.3
AE014296-1084|AAG22329.1| 102|Drosophila melanogaster CG18777-P... 29 5.3
X98766-1|CAA67304.1| 544|Drosophila melanogaster H15 protein pr... 28 7.0
BT022140-1|AAY51535.1| 660|Drosophila melanogaster IP01538p pro... 28 7.0
BT003206-1|AAO24961.1| 355|Drosophila melanogaster RE23893p pro... 28 7.0
BT001783-1|AAN71538.1| 315|Drosophila melanogaster RH19933p pro... 28 7.0
BT001680-1|AAN71435.1| 501|Drosophila melanogaster RE55923p pro... 28 7.0
AY060775-1|AAL28323.1| 197|Drosophila melanogaster GH23965p pro... 28 7.0
AE014298-1778|AAF48172.1| 197|Drosophila melanogaster CG2555-PA... 28 7.0
AE014296-1755|AAO41261.2| 315|Drosophila melanogaster CG33205-P... 28 7.0
AE014296-1754|AAO41260.2| 462|Drosophila melanogaster CG33205-P... 28 7.0
AE014296-1753|AAO41259.2| 354|Drosophila melanogaster CG33205-P... 28 7.0
AE014296-1752|AAO41258.2| 354|Drosophila melanogaster CG33205-P... 28 7.0
AE014296-1751|ABC66157.1| 355|Drosophila melanogaster CG33205-P... 28 7.0
AE014296-1750|AAO41257.2| 501|Drosophila melanogaster CG33205-P... 28 7.0
AE014296-1749|AAO41256.2| 501|Drosophila melanogaster CG33205-P... 28 7.0
AE014296-852|AAF47904.2| 242|Drosophila melanogaster CG11345-PA... 28 7.0
AE014134-917|AAF52249.1| 660|Drosophila melanogaster CG6604-PA ... 28 7.0
AE013599-1241|AAF58690.1| 127|Drosophila melanogaster CG9076-PA... 28 7.0
>AE013599-1466|AAM68675.1| 330|Drosophila melanogaster CG30045-PA
protein.
Length = 330
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNT 509
+P+I+ E +GSYKY Y+ +G + EEGY NP T
Sbjct: 181 IPIIRQEQEVNFDGSYKYLYETGNGINAEEEGYLKNPGT 219
>AY071610-1|AAL49232.1| 195|Drosophila melanogaster RE65906p
protein.
Length = 195
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 249 PAINTYPQNNYAPPQNSYYP-QNTYAPPQNTY 341
P+ P+N Y PP N+Y P NTY PP NTY
Sbjct: 59 PSSTVKPENTYLPPDNTYGPPDNTYGPPDNTY 90
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 258 NTY--PQNNYAPPQNSY-YPQNTYAPPQ 332
NTY P N Y PP N+Y P NTY PP+
Sbjct: 67 NTYLPPDNTYGPPDNTYGPPDNTYGPPE 94
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = +3
Query: 219 KYVERSTQA--DPAINTYPQNNYAP------PQNSYYPQNTYAPPQNTY 341
+++ R +A P+ YP+ P P ++ P+NTY PP NTY
Sbjct: 28 RFLARQVEAIPSPSPTGYPEAGITPSVPFDLPSSTVKPENTYLPPDNTY 76
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 195 PAYPVET-SKYVERSTQADPAINTY--PQNNYAPPQNSYYPQNTYAPP 329
P+ P + S V+ P NTY P N Y PP N+Y P T + P
Sbjct: 52 PSVPFDLPSSTVKPENTYLPPDNTYGPPDNTYGPPDNTYGPPETDSVP 99
>AE014296-3609|AAF51772.1| 195|Drosophila melanogaster CG14569-PA
protein.
Length = 195
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 249 PAINTYPQNNYAPPQNSYYP-QNTYAPPQNTY 341
P+ P+N Y PP N+Y P NTY PP NTY
Sbjct: 59 PSSTVKPENTYLPPDNTYGPPDNTYGPPDNTY 90
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 258 NTY--PQNNYAPPQNSY-YPQNTYAPPQ 332
NTY P N Y PP N+Y P NTY PP+
Sbjct: 67 NTYLPPDNTYGPPDNTYGPPDNTYGPPE 94
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = +3
Query: 219 KYVERSTQA--DPAINTYPQNNYAP------PQNSYYPQNTYAPPQNTY 341
+++ R +A P+ YP+ P P ++ P+NTY PP NTY
Sbjct: 28 RFLARQVEAIPSPSPTGYPEAGITPSVPFDLPSSTVKPENTYLPPDNTY 76
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 195 PAYPVET-SKYVERSTQADPAINTY--PQNNYAPPQNSYYPQNTYAPP 329
P+ P + S V+ P NTY P N Y PP N+Y P T + P
Sbjct: 52 PSVPFDLPSSTVKPENTYLPPDNTYGPPDNTYGPPDNTYGPPETDSVP 99
>AE014296-1088|AAF50683.1| 239|Drosophila melanogaster CG12330-PA
protein.
Length = 239
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYY----PQNTYAPPQNTYRXXXX 356
P P P + Y P+ +Y PP + P N Y PP N
Sbjct: 43 PRPPPPAPANSYGPPKKGNGKPPPAPPKPSYGPPPKNGNGKPPPSNAYLPPGNG-NGGSS 101
Query: 357 XXXXXXXXXXXXVPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTN 500
+P+IK E +GSY YEY+ +G E GY N
Sbjct: 102 GGGGAGGGGGEDIPIIKLESKVNTDGSYMYEYETGNGIKAEEMGYLKN 149
>BT024398-1|ABC86460.1| 150|Drosophila melanogaster IP05065p
protein.
Length = 150
Score = 35.9 bits (79), Expect = 0.035
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 399 VIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQA 521
++K +GSY+Y Y+ ++G E GY NP ++ +A
Sbjct: 58 ILKQNFDLNPDGSYQYNYETSNGIRADEAGYLKNPGSQIEA 98
>AE013599-1237|AAF58694.1| 135|Drosophila melanogaster CG9079-PA
protein.
Length = 135
Score = 35.9 bits (79), Expect = 0.035
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 399 VIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQA 521
++K +GSY+Y Y+ ++G E GY NP ++ +A
Sbjct: 43 ILKQNFDLNPDGSYQYNYETSNGIRADEAGYLKNPGSQIEA 83
>BT001593-1|AAN71348.1| 750|Drosophila melanogaster RE27538p
protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 267 PQNNYAPPQNSYYPQNTYAPPQN 335
P NNY P + P N+YAPPQ+
Sbjct: 295 PSNNYVKPPPQHPPTNSYAPPQH 317
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 180 TFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPP 290
T++ P +P S YV + + INTYPQ++Y+PP
Sbjct: 417 TYDQAPQHP--PSNYVSSDSHS---INTYPQDDYSPP 448
>AY071231-1|AAL48853.1| 217|Drosophila melanogaster RE26879p
protein.
Length = 217
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 237 TQADPAINTYPQNNYAPP-QNSYYPQNTYAPPQNTYR 344
T A+P + PQN Y PP Q+ P N Y PP Y+
Sbjct: 17 THAEPPV---PQNQYLPPNQSPQAPSNNYLPPTQGYQ 50
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +3
Query: 267 PQNNYAPPQNSYY-PQNTYAPPQ 332
P NNY PP Y P + Y PPQ
Sbjct: 38 PSNNYLPPTQGYQSPSSNYLPPQ 60
>AE014296-790|AAF47859.2| 750|Drosophila melanogaster CG15005-PA
protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 267 PQNNYAPPQNSYYPQNTYAPPQN 335
P NNY P + P N+YAPPQ+
Sbjct: 295 PSNNYVKPPPQHPPTNSYAPPQH 317
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 180 TFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPP 290
T++ P +P S YV + + INTYPQ++Y+PP
Sbjct: 417 TYDQAPQHP--PSNYVSSDSHS---INTYPQDDYSPP 448
>AE013599-2993|AAF57484.2| 217|Drosophila melanogaster CG9036-PA
protein.
Length = 217
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 237 TQADPAINTYPQNNYAPP-QNSYYPQNTYAPPQNTYR 344
T A+P + PQN Y PP Q+ P N Y PP Y+
Sbjct: 17 THAEPPV---PQNQYLPPNQSPQAPSNNYLPPTQGYQ 50
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +3
Query: 267 PQNNYAPPQNSYY-PQNTYAPPQ 332
P NNY PP Y P + Y PPQ
Sbjct: 38 PSNNYLPPTQGYQSPSSNYLPPQ 60
>U84750-1|AAB88068.1| 101|Drosophila melanogaster cuticle protein
ACP65A protein.
Length = 101
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQA 521
V V++ E G YK+ Y+++DGT EEG N T ++
Sbjct: 22 VEVLEYESENTGLGGYKFSYKLSDGTSRTEEGVVNNAGTDNES 64
>AY113609-1|AAM29614.1| 105|Drosophila melanogaster RH61147p
protein.
Length = 105
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQA 521
V V++ E G YK+ Y+++DGT EEG N T ++
Sbjct: 26 VEVLEYESENTGLGGYKFSYKLSDGTSRTEEGVVNNAGTDNES 68
>AE014296-1086|AAF50685.2| 105|Drosophila melanogaster CG10297-PA
protein.
Length = 105
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQA 521
V V++ E G YK+ Y+++DGT EEG N T ++
Sbjct: 26 VEVLEYESENTGLGGYKFSYKLSDGTSRTEEGVVNNAGTDNES 68
>AY071171-1|AAL48793.1| 171|Drosophila melanogaster RE21944p
protein.
Length = 171
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Frame = +3
Query: 267 PQNNYAPPQNSY----YPQNTYAPP 329
P N Y PP N+Y P+NTY PP
Sbjct: 95 PDNTYGPPDNTYGPPAEPENTYGPP 119
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 267 PQNNYAPPQNSYYPQNTYAPPQNTY 341
P Y PP P NTY PP NTY
Sbjct: 85 PDLTYGPPDE---PDNTYGPPDNTY 106
>AE014296-3610|AAF51773.2| 171|Drosophila melanogaster CG14568-PA
protein.
Length = 171
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Frame = +3
Query: 267 PQNNYAPPQNSY----YPQNTYAPP 329
P N Y PP N+Y P+NTY PP
Sbjct: 95 PDNTYGPPDNTYGPPAEPENTYGPP 119
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 267 PQNNYAPPQNSYYPQNTYAPPQNTY 341
P Y PP P NTY PP NTY
Sbjct: 85 PDLTYGPPDE---PDNTYGPPDNTY 106
>BT029065-1|ABJ16998.1| 175|Drosophila melanogaster IP07570p
protein.
Length = 175
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYF----TNPN 506
+P+IK D+GSYK EY+ + E G+ TNPN
Sbjct: 36 IPIIKYNKEQSDDGSYKTEYETGNSIIHEETGFLKDFDTNPN 77
>AE013599-1482|AAF58515.1| 190|Drosophila melanogaster CG8515-PA
protein.
Length = 190
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYF----TNPN 506
+P+IK D+GSYK EY+ + E G+ TNPN
Sbjct: 51 IPIIKYNKEQSDDGSYKTEYETGNSIIHEETGFLKDFDTNPN 92
>AY119097-1|AAM50957.1| 173|Drosophila melanogaster LP12385p
protein.
Length = 173
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 429 NGSYKYEYQIADGTHVGEEGYFTNPN 506
+GSY+Y +++ DGT E GYF N
Sbjct: 43 DGSYEYRFELDDGTARYERGYFVKIN 68
>AE014298-1915|AAF48282.1| 173|Drosophila melanogaster CG15757-PA
protein.
Length = 173
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 429 NGSYKYEYQIADGTHVGEEGYFTNPN 506
+GSY+Y +++ DGT E GYF N
Sbjct: 43 DGSYEYRFELDDGTARYERGYFVKIN 68
>AE014296-857|AAN11604.1| 266|Drosophila melanogaster CG32249-PA
protein.
Length = 266
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 267 PQNNYAPPQNSYYPQNTYAPPQ 332
P+N Y PPQ P+NTY PPQ
Sbjct: 246 PRNTYLPPQ-VIAPRNTYLPPQ 266
>AE013599-1242|AAF58689.1| 369|Drosophila melanogaster CG13222-PA
protein.
Length = 369
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/65 (27%), Positives = 23/65 (35%)
Frame = +3
Query: 306 PQNTYAPPQNTYRXXXXXXXXXXXXXXXXVPVIKNEMYYGDNGSYKYEYQIADGTHVGEE 485
P N APP VP+ + +GS+ Y Y ADGT +
Sbjct: 76 PLNPLAPPLTGAALQNPYTRYNQYQQQNYVPITAYQNELNLDGSFSYGYSSADGTTAQAQ 135
Query: 486 GYFTN 500
GY N
Sbjct: 136 GYVKN 140
>AY119036-1|AAM50896.1| 137|Drosophila melanogaster LP06027p
protein.
Length = 137
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQ 518
V ++++ ++GSY + Y DGTH EE N T+ +
Sbjct: 32 VAILESSHEKHEDGSYNFSYLGEDGTHRREEAVVRNQGTENE 73
>AE014296-3598|AAF51762.1| 137|Drosophila melanogaster CG7160-PA
protein.
Length = 137
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQ 518
V ++++ ++GSY + Y DGTH EE N T+ +
Sbjct: 32 VAILESSHEKHEDGSYNFSYLGEDGTHRREEAVVRNQGTENE 73
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 189 PEPAYPVE--TSKYVERSTQADPAINTYPQNN--YAPPQNSYYPQNTYAPPQNTY 341
P P+Y + +Y S Q PA Y + Y+P + P N Y+P +TY
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTY 1820
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 189 PEPAYPVE--TSKYVERSTQADPAINTYPQNN--YAPPQNSYYPQNTYAPPQNTY 341
P P+Y + +Y S Q PA Y + Y+P + P N Y+P +TY
Sbjct: 285 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTY 339
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 189 PEPAYPVE--TSKYVERSTQADPAINTYPQNN--YAPPQNSYYPQNTYAPPQNTY 341
P P+Y + +Y S Q PA Y + Y+P + P N Y+P +TY
Sbjct: 1306 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTY 1360
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 189 PEPAYPVE--TSKYVERSTQADPAINTYPQNN--YAPPQNSYYPQNTYAPPQNTY 341
P P+Y + +Y S Q PA Y + Y+P + P N Y+P +TY
Sbjct: 1764 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTY 1818
>AY071102-1|AAL48724.1| 321|Drosophila melanogaster RE16136p
protein.
Length = 321
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 180 TFEPEPAYPVETSK-YVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
T + Y +T K V R + D ++ P N Y PP + P N Y PP
Sbjct: 107 TILADDGYRYKTHKRVVTRRHRRD--VSHLPSNEYLPPVQAAAPSNEYLPP 155
>AE014297-3695|AAF56384.1| 208|Drosophila melanogaster CG11786-PA
protein.
Length = 208
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 258 NTYPQNNYAPPQNSYY--PQNTYAPP 329
N P NNY PP N+ Y P Y PP
Sbjct: 74 NPPPNNNYLPPPNNNYLPPPPEYGPP 99
>AE014296-860|AAF47910.2| 321|Drosophila melanogaster CG7465-PA
protein.
Length = 321
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 180 TFEPEPAYPVETSK-YVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
T + Y +T K V R + D ++ P N Y PP + P N Y PP
Sbjct: 107 TILADDGYRYKTHKRVVTRRHRRD--VSHLPSNEYLPPVQAAAPSNEYLPP 155
>AE013599-1472|AAF58520.1| 166|Drosophila melanogaster CG8836-PA
protein.
Length = 166
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 408 NEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQ 518
N++ YG GSY Y Y+ +G H E G N ++Q
Sbjct: 74 NDVNYGA-GSYSYNYETENGIHGEERGVPVNIGNQQQ 109
>BT024331-1|ABC86393.1| 296|Drosophila melanogaster IP10364p
protein.
Length = 296
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 509 RIGIREVAFLAYVCSIGDLILV 444
RIGI V L VC IGD +LV
Sbjct: 191 RIGIETVPLLVTVCKIGDYVLV 212
>AY094868-1|AAM11221.1| 228|Drosophila melanogaster RE35615p
protein.
Length = 228
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTY--PQNNYAPPQNSYYPQNTYAPPQNTY 341
P+P + + T + VE D TY P Y PP P Y PP Y
Sbjct: 54 PDPPFDLPTEEAVEFPQPED----TYGPPPETYGPPSLVEAPAEVYGPPDQIY 102
>AY070959-1|AAL48581.1| 235|Drosophila melanogaster RE05963p
protein.
Length = 235
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGY 491
VP++K + D+GSY Y Y+ AD + E Y
Sbjct: 29 VPILKQIDKHNDDGSYTYGYEAADKSFKIETKY 61
>AE014297-4063|AAF56661.2| 235|Drosophila melanogaster CG15884-PA
protein.
Length = 235
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGY 491
VP++K + D+GSY Y Y+ AD + E Y
Sbjct: 29 VPILKQIDKHNDDGSYTYGYEAADKSFKIETKY 61
>AE014297-3977|AAN14081.2| 325|Drosophila melanogaster CG31081-PA
protein.
Length = 325
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQ--ADPAINTYP--QNNY--APPQNSYYPQNTYAPPQNTY 341
P+P Y E+ Q D YP Q Y +P Q++Y PQ+ Y PP +Y
Sbjct: 189 PQPGKASSLGYYPEQQPQYEQDAPSEEYPAGQVGYLPSPQQSAYQPQSGYLPPLPSY 245
>AE014296-3608|AAF51771.1| 228|Drosophila melanogaster CG14570-PA
protein.
Length = 228
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTY--PQNNYAPPQNSYYPQNTYAPPQNTY 341
P+P + + T + VE D TY P Y PP P Y PP Y
Sbjct: 54 PDPPFDLPTEEAVEFPQPED----TYGPPPETYGPPSLVEAPAEVYGPPDQIY 102
>AE013599-2161|AAF58076.3| 296|Drosophila melanogaster CG8395-PA
protein.
Length = 296
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 509 RIGIREVAFLAYVCSIGDLILV 444
RIGI V L VC IGD +LV
Sbjct: 191 RIGIETVPLLVTVCKIGDYVLV 212
>BT011122-1|AAR82789.1| 201|Drosophila melanogaster LD11394p
protein.
Length = 201
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 204 PVETSKYVERSTQADPAINTYPQNNYAPP--QNSYY-PQNTYAPPQNTY 341
PV++S + + PA+ Q YA P Q SY P N Y PP TY
Sbjct: 42 PVQSSYAAPSVSYSAPAV----QQTYAAPAIQQSYVAPSNEYLPPVQTY 86
>AY071554-1|AAL49176.1| 102|Drosophila melanogaster RE62456p
protein.
Length = 102
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQA 521
V V++++ G + +Y Y + +DGT EEG N T+ +A
Sbjct: 20 VEVLRSDSNVGID-NYSYAVETSDGTSKSEEGVLKNAGTELEA 61
>AE014298-2000|AAF48343.1| 186|Drosophila melanogaster CG1368-PA
protein.
Length = 186
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 204 PVETSKYVERSTQADPAINTYPQNNYAPP--QNSYY-PQNTYAPPQNTY 341
PV++S + + PA+ Q YA P Q SY P N Y PP TY
Sbjct: 27 PVQSSYAAPSVSYSAPAV----QQTYAAPAIQQSYVAPSNEYLPPVQTY 71
>AE014296-1084|AAG22329.1| 102|Drosophila melanogaster CG18777-PA
protein.
Length = 102
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTKRQA 521
V V++++ G + +Y Y + +DGT EEG N T+ +A
Sbjct: 20 VEVLRSDSNVGID-NYSYAVETSDGTSKSEEGVLKNAGTELEA 61
>X98766-1|CAA67304.1| 544|Drosophila melanogaster H15 protein
protein.
Length = 544
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
P PA P + +A P +N YPQ ++P Q PQ+ +PP
Sbjct: 494 PAPATPTSSCGSASPDLRARPQLNHYPQ-RFSPYQ---VPQHQASPP 536
>BT022140-1|AAY51535.1| 660|Drosophila melanogaster IP01538p
protein.
Length = 660
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
P PA P + +A P +N YPQ ++P Q PQ+ +PP
Sbjct: 610 PAPATPTSSCGSASPDLRARPQLNHYPQ-RFSPYQ---VPQHQASPP 652
>BT003206-1|AAO24961.1| 355|Drosophila melanogaster RE23893p
protein.
Length = 355
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 176 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 214
>BT001783-1|AAN71538.1| 315|Drosophila melanogaster RH19933p
protein.
Length = 315
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 136 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 174
>BT001680-1|AAN71435.1| 501|Drosophila melanogaster RE55923p
protein.
Length = 501
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 322 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 360
>AY060775-1|AAL28323.1| 197|Drosophila melanogaster GH23965p
protein.
Length = 197
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYF 494
+P+++++ NG+Y + + +G H E G F
Sbjct: 70 IPIVRSDYNSDANGNYNFGFDTGNGIHRDETGEF 103
>AE014298-1778|AAF48172.1| 197|Drosophila melanogaster CG2555-PA
protein.
Length = 197
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYF 494
+P+++++ NG+Y + + +G H E G F
Sbjct: 70 IPIVRSDYNSDANGNYNFGFDTGNGIHRDETGEF 103
>AE014296-1755|AAO41261.2| 315|Drosophila melanogaster CG33205-PE,
isoform E protein.
Length = 315
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 136 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 174
>AE014296-1754|AAO41260.2| 462|Drosophila melanogaster CG33205-PA,
isoform A protein.
Length = 462
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 283 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 321
>AE014296-1753|AAO41259.2| 354|Drosophila melanogaster CG33205-PG,
isoform G protein.
Length = 354
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 175 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 213
>AE014296-1752|AAO41258.2| 354|Drosophila melanogaster CG33205-PF,
isoform F protein.
Length = 354
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 175 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 213
>AE014296-1751|ABC66157.1| 355|Drosophila melanogaster CG33205-PH,
isoform H protein.
Length = 355
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 176 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 214
>AE014296-1750|AAO41257.2| 501|Drosophila melanogaster CG33205-PC,
isoform C protein.
Length = 501
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 322 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 360
>AE014296-1749|AAO41256.2| 501|Drosophila melanogaster CG33205-PB,
isoform B protein.
Length = 501
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 240 QADPAINTYPQNNYAPPQNSYYPQ----NTYA-PPQNTY 341
Q P+ P Q SYYPQ +TYA PP N+Y
Sbjct: 322 QQQPSYQASPYQQQQQQQPSYYPQQNGGSTYAQPPYNSY 360
>AE014296-852|AAF47904.2| 242|Drosophila melanogaster CG11345-PA
protein.
Length = 242
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 174 VRTFEPEPAYPVETSKYVERSTQADPAINT---YPQNNYAPPQNSYYPQNTYAPPQ 332
V+ P+PAY + + VE+ PA+ P +YA P P NTY PPQ
Sbjct: 169 VKVNPPKPAY-LPPAPVVEQPRYVAPAVVPAFKIPIPSYAAPLEE--PVNTYLPPQ 221
>AE014134-917|AAF52249.1| 660|Drosophila melanogaster CG6604-PA
protein.
Length = 660
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
P PA P + +A P +N YPQ ++P Q PQ+ +PP
Sbjct: 610 PAPATPTSSCGSASPDLRARPQLNHYPQ-RFSPYQ---VPQHQASPP 652
>AE013599-1241|AAF58690.1| 127|Drosophila melanogaster CG9076-PA
protein.
Length = 127
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 393 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEG 488
VP++K+ +GSY + ++ ADGT+ E G
Sbjct: 28 VPILKSVTEQLSSGSYLFSFESADGTYREELG 59
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,938,241
Number of Sequences: 53049
Number of extensions: 429405
Number of successful extensions: 1875
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2032955904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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